Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g02507 ATGAACGAAGCTCAAACTGAAATCACAATTCCTCACTTGTTCAGATGCCCCATAAGTCTAGATTTGTTGGAAGATCCAGTGACTTTATGCACTGGACAAACCTATGATAGATCAAGCATACAAAAATGGATTTCTGCAGGTAATTTCACATGTCCTGTTACAATGCAGAAGCTTCATGATTTATCCTTTGTTCCTAATCACACTCTTCGTCATTTGATTCATCAATGGCTTCAACTTGGTTCACAATTTCACCCTGATTATTCAACAACATCATCACAAACAGAAGAGGTTTGTCATGTGTTAGGAAATTCTCAAAAACTAGTACATGAAATTGTTCAAGTTGTTAATCAAAATTGTAGTGAAGTTTCTAAGGCTGCAATTAAGGCTTTATCAGCATTATGTTCATTGCAATCCAATAGAGAGAGTTTGGTGAGAGCAGGAGCAATAGATGGAATCATAACATATATTTCAGAATGTGAAACAAGACACAAGAATTTGGCTCCTTTAGGAATGGCAACAATGAAGAAACTTTTGGTACTAGATAGTGCTAAAGAGGCATTGGTGAATAATCCAAAGGGTGTTGAAAGTTTGGTGAAGATGGTTTTCAAGGTTTGTAATCAAGAGTGTAGTGAGAGTGCTGTTGGGATACTTTCAATTGTTTGTTGTGATTTTGGGAGTGCAAGAGAGGAAGCTATTGGAGCTGGTGTTTTGACTCAGTTGTTGTTTCTTCTGCAGAGTCAGTGTGGTACTAAAACTAAAACTAAGGCTAGACTATTGCTTAAGTTGCTCAGATCTAAGTGGAGTGAAGAATCAATGCAGATGTAG 825 0.3709 MNEAQTEITIPHLFRCPISLDLLEDPVTLCTGQTYDRSSIQKWISAGNFTCPVTMQKLHDLSFVPNHTLRHLIHQWLQLGSQFHPDYSTTSSQTEEVCHVLGNSQKLVHEIVQVVNQNCSEVSKAAIKALSALCSLQSNRESLVRAGAIDGIITYISECETRHKNLAPLGMATMKKLLVLDSAKEALVNNPKGVESLVKMVFKVCNQECSESAVGILSIVCCDFGSAREEAIGAGVLTQLLFLLQSQCGTKTKTKARLLLKLLRSKWSEESMQM 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g02507 274 ProSiteProfiles U-box domain profile. 9 83 IPR003613 GO:0004842|GO:0016567
Car05g02507 274 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 88 IPR013083 -
Car05g02507 274 CDD RING-Ubox_PUB 14 56 IPR045210 -
Car05g02507 274 SUPERFAMILY ARM repeat 103 248 IPR016024 -
Car05g02507 274 Gene3D - 89 272 IPR011989 -
Car05g02507 274 PANTHER OS02G0542800 PROTEIN 89 266 - -
Car05g02507 274 PANTHER OS02G0542800 PROTEIN 9 86 - -
Car05g02507 274 SUPERFAMILY RING/U-box 5 80 - -
Car05g02507 274 Pfam U-box domain 10 78 IPR003613 GO:0004842|GO:0016567
Car05g02507 274 PANTHER WDSAM1 PROTEIN 89 266 IPR045185 GO:0061630
Car05g02507 274 PANTHER WDSAM1 PROTEIN 9 86 IPR045185 GO:0061630
Car05g02507 274 SMART Ubox_2 13 76 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g02507 Car-Chr5 70154390 70155586 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g02507 89 269 U-box Gene Family AT3G19380 31.551 1.38e-12 65.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g02507 - - mtr:MTR_3g096370 352.443