Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g02490 ATGGCTACCACTACTGCTCCATCCCGTCAACTTTCTCAAAAGGAAGCTGACATCCAGATTATGTTGGCTGCCGATGTTCACCTCGGTACCAAGAACTGTAACTTCCAGATGGAGCGTTACATTTTTAAACGCCGCAATGATGGTATTTATATCATAAATCTTGGAAAGACATGGGATAAACTTAACCTTGCTGCTAGGGTCATTGTTGCCATTGAGAACTCTCAGGACATCATTGTTCAATCTGCAAGACCTTATGGACAAAGAGCTGTTCTCAAATTTGCTCAATACACTGGAGCTCATGCTATTGCTGGAAGGCACACTCCTGGAACCTTCACTAATCAGCTACAAACTTCCTTCAGTGAGCCTCGTCTTCTTATACTCACTGATCCAAGAACTGATCACCAGCCAATCAAGGAAGCTGCTCTTGGAAATATTCCTACAATTGCTTTCTGTGACACCGATTCTCCTATGAATTATGTTGATATTGGAATTCCTGCTAACAACAAGGGTAAGCATAGCATAGGGTGTCTCTTTTGGCTTTTGGCTAGGATGGTTTTGCAGATGCGTGGTACTATCCGCCCTGGCCTTAAGTGGGATGTGATGGTGGATCTATTTTTCTATAGAGAACCAGAGGAGGCCAAGCAGCAAGAGGAGGATGAAGCTCCTGTTCCAGACTATGGCATTGCTGACTTCAATGCTGCTGCTATTGCCAGTGATGGCCAGTGGCCTGCTGCAATCGATCAACCATGGACTGATGCTGTTCCACAACCTATTCCAGCAGTCCCTGCTGTCAACTGGGCTGCTGCCCCAGAAGCTGTTGCAACCGGGGACTGGGTTGAAGCTGTTCCACCTCCACAACAAATACCTGCTCCTGGTGTTGAATCTATCCAAGCAACTGGCTGGGAATAA 909 0.4631 MATTTAPSRQLSQKEADIQIMLAADVHLGTKNCNFQMERYIFKRRNDGIYIINLGKTWDKLNLAARVIVAIENSQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMNYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGLKWDVMVDLFFYREPEEAKQQEEDEAPVPDYGIADFNAAAIASDGQWPAAIDQPWTDAVPQPIPAVPAVNWAAAPEAVATGDWVEAVPPPQQIPAPGVESIQATGWE 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g02490 302 Hamap 40S ribosomal protein SA [rps-0]. 5 245 IPR027498 GO:0003735|GO:0006412|GO:0015935
Car05g02490 302 Gene3D - 17 222 - -
Car05g02490 302 ProSitePatterns Ribosomal protein S2 signature 2. 122 146 IPR018130 GO:0003735|GO:0005840|GO:0006412
Car05g02490 302 MobiDBLite consensus disorder prediction 281 302 - -
Car05g02490 302 CDD RPS2 21 187 IPR001865 GO:0003735|GO:0005840|GO:0006412
Car05g02490 302 PANTHER 40S RIBOSOMAL PROTEIN SA 9 292 - -
Car05g02490 302 PRINTS Ribosomal protein S2 signature 18 36 IPR001865 GO:0003735|GO:0005840|GO:0006412
Car05g02490 302 PRINTS Ribosomal protein S2 signature 48 57 IPR001865 GO:0003735|GO:0005840|GO:0006412
Car05g02490 302 PRINTS Ribosomal protein S2 signature 97 114 IPR001865 GO:0003735|GO:0005840|GO:0006412
Car05g02490 302 PRINTS Ribosomal protein S2 signature 122 139 IPR001865 GO:0003735|GO:0005840|GO:0006412
Car05g02490 302 PRINTS Ribosomal protein S2 signature 139 150 IPR001865 GO:0003735|GO:0005840|GO:0006412
Car05g02490 302 PRINTS Ribosomal protein S2 signature 160 174 IPR001865 GO:0003735|GO:0005840|GO:0006412
Car05g02490 302 SUPERFAMILY Ribosomal protein S2 13 203 IPR023591 -
Car05g02490 302 Pfam Ribosomal protein S2 120 185 IPR001865 GO:0003735|GO:0005840|GO:0006412
Car05g02490 302 Pfam Ribosomal protein S2 21 115 IPR001865 GO:0003735|GO:0005840|GO:0006412
Car05g02490 302 TIGRFAM uS2_euk_arch: ribosomal protein uS2 14 209 IPR005707 GO:0003735|GO:0006412|GO:0015935
Car05g02490 302 PANTHER 40S RIBOSOMAL PROTEIN SA 9 292 IPR005707 GO:0003735|GO:0006412|GO:0015935
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g02490 Car-Chr5 70033876 70037724 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g02490 8 265 Cytoplasmic Ribosomal Protein Gene Family AT3G04770 78.927 3.93e-151 423
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g02490 K02998 - gmx:100805318 528.48