Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g02484 ATGAGTGGAACCGACAGAAAGCGCTCTTCAAAGTGGGATTTGGGCGATGAGCTTGAATTCTCACCTGGTAGCAAGCAAATGCGGCCTGGGTGGTCTTCTGCAGATGTTGCTGGTAGAAATAGTTCAAAACGGGCTTATTCACAAGGAAATGATAAATTAAGACCTGTTATGGGATTTTCATCAAAGGAATTTTCTGGAGGCAGAGGTTCAAATAAGGACGGTGATTTGAATAAAGATCATAGAGTTGTGGATACAAGAAGAGAATGGGACACTGATGGAAATTACAGCAAAAAGATGTCTCCTTGGCCAGAGGAACGGAAACAGCAGAGGCATAGTCAATCCCCCAATAATGGTTGGAGCAGGAGCAGTCGGAGCCGGAGCCGGAGCCCTCCTCGTGGTTTTAGGAGCAGTCGAAGCCGGAGCCCTCGTGGTTTTAGGTGGGATTCAGGAGTCGACGATAGAAAAAGGATGAGGGTTGGAGGATCAACACAACCATGCAGAGATTTTCCTGCTGGTAAATGCAGAAGAGGCAGTCTTTGCAATTTTCTACATGATGATAACCAAAATCATGATAATAGTTGGGAAAGTAAGCACTGGGAAGATGGAGCTCCTAGATATTCTGCTCCTCATGAGAGCGTGGACCATTCTCTTAAGAGTGGTAGATCTAATGAAGCCTGTATAAATTTTGCAAAAGGCAGGTGTAGAATGGGAGCATCTTGCAAGTTTGTGCATGATGACGACTCTGATGGATATGGTAAAGTTTCTATGGATGAATTCACTAGAGAAAGAGAAATCAACAGAAGGCATAGAGATAGTTCTTTTGAGCAGGGTGGCGGGCATGCGCCTAACCGCACTAGTGATACTCCTTGCAAATTTTTTGCTAATGGCAATTGTCGTAATGGTAAATATTGTAGATTTGCTCATGATAAGCAAGCATGTAGGAGCCCTAATAGAAGATTAAGGGATGATAGACGGGCCAGCAATCCAAGTGGAGATCGTCAAATGTTGGATAGACGAAAATCGAGCAATTCCATCAGTCCTGATAGAAGGCTTAAAGATGATAAGCGGGGTTTGGATGGCGATGTGGCTGATCCAGATATAGTTGGGGACAGTCCAAAGCAGAACGATACAGTTTCTGTAACTGATACAGCAAAGCTGATCGAGAACAAAAGTGGAAATGTCGGTGCCACAGAGCGAGGATCTACTGCTTGGCCTATGACGGATGGATGGGATCATGGTTTAGATAAGAGCAGACTGCATGGTAAACCATCAATTTCGAGTGATAAGAAGGAAGCCGATCGTTGGATAGCAGAAAATACTGGTGCCAACATGCATGGCTCCCAGCCAATAGGTACAGACATTTGGCCGGGTGATGCAGAAATGTCTCCTGATTGGAATTATAGGATGGGATCTTCCAGTCATATGGAAGAACCTGGACAGAATAAGCATGGGATAAGCCAGGGTGGTACTTATTTATCTACCTCTGAACACAGCAAAATACAAGTTGCTCCAGGACAAGGCATCAATCAGATTACTCAGAATGTAAATCCTTTGCATACTTCCAGCTCTCATGCAATTGGGCAAAGTCAAGTGGCCGTTCCCATTCTTCCTTCAAGAGAAGGAATTGTTGATGCTATGCACAGCCAAGAAGTCTGTACTGAGAAAAAGTACACCATGGAACCTAATATCATGGATCCAGGCTTATCTCATGTTAGTTCAAGAAACCCTTCAACTCAGAATGAAGTAAGCAATGAACAGCTTGCTCAACTCACCAATCTCTCAGCCTCTCTAGCTCATATCCTTGGAGCAGGTCAGCAGCTGCCGCAGCTATATGCTGCTTTAAATTCTCATGATTTAAAGGACAGTCCTTCCCTAGCAAAAACTCAAGTGCCTGCAATACCTGTTTCGATTGCATGCTTCAAACCAGATCCAGCTGTTGGACTCCCGAAGCCGTATGATCCAATGCATGATAGTATTGAGCAAAAGAACGCGGATGCAAGTGGGGTGCTCCCAGCTATTCCTCAAAGTAAAAATATTGCTGAAGTAGAAACTCTCTCGCAGTTGTCTAAATCTGGAAGACAAAATTGTGGTGATTCTATTAAGGCTGCCTCCTCAGAATTTGTCAAGAGTGATAATCTAATCCAGTTGCAGCCTGGTCAAAACACAGTGGTTAACAAGGATAACAATGAAGAGGTTGCTAAGGAAAGGCAAAGCTCTCAAGATGGTCATCATAAAAGTACAAAAGAAAATGGTCCGCAAAATATGGACCAAAATGGTGGGCCTGACGATGCCAATAAAGCAAAGGATATGAAAGGGATTCGTGCATTTAAATTTGCACTGGCTGAGTTTGTTAAGGAGCTTCTGAAACCAACATGGAAAGAAGGTCAAATCACTAAAGAAGATTATAAAACAATTGTGAAGAAAGTTGTTGATAAAGTAACTGGTACCATGCAGGGGGCCAATATTCCTCAGACACAAGAAAAAATTGACCACTATTTGTCATTTTCAAAACCAAAGCTCAACAAACTTGTTCAGGCATATGTGGAGAAGGTTCAGAAGTCTTAG 2565 0.4324 MSGTDRKRSSKWDLGDELEFSPGSKQMRPGWSSADVAGRNSSKRAYSQGNDKLRPVMGFSSKEFSGGRGSNKDGDLNKDHRVVDTRREWDTDGNYSKKMSPWPEERKQQRHSQSPNNGWSRSSRSRSRSPPRGFRSSRSRSPRGFRWDSGVDDRKRMRVGGSTQPCRDFPAGKCRRGSLCNFLHDDNQNHDNSWESKHWEDGAPRYSAPHESVDHSLKSGRSNEACINFAKGRCRMGASCKFVHDDDSDGYGKVSMDEFTREREINRRHRDSSFEQGGGHAPNRTSDTPCKFFANGNCRNGKYCRFAHDKQACRSPNRRLRDDRRASNPSGDRQMLDRRKSSNSISPDRRLKDDKRGLDGDVADPDIVGDSPKQNDTVSVTDTAKLIENKSGNVGATERGSTAWPMTDGWDHGLDKSRLHGKPSISSDKKEADRWIAENTGANMHGSQPIGTDIWPGDAEMSPDWNYRMGSSSHMEEPGQNKHGISQGGTYLSTSEHSKIQVAPGQGINQITQNVNPLHTSSSHAIGQSQVAVPILPSREGIVDAMHSQEVCTEKKYTMEPNIMDPGLSHVSSRNPSTQNEVSNEQLAQLTNLSASLAHILGAGQQLPQLYAALNSHDLKDSPSLAKTQVPAIPVSIACFKPDPAVGLPKPYDPMHDSIEQKNADASGVLPAIPQSKNIAEVETLSQLSKSGRQNCGDSIKAASSEFVKSDNLIQLQPGQNTVVNKDNNEEVAKERQSSQDGHHKSTKENGPQNMDQNGGPDDANKAKDMKGIRAFKFALAEFVKELLKPTWKEGQITKEDYKTIVKKVVDKVTGTMQGANIPQTQEKIDHYLSFSKPKLNKLVQAYVEKVQKS 854
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g02484 854 MobiDBLite consensus disorder prediction 568 584 - -
Car05g02484 854 MobiDBLite consensus disorder prediction 314 377 - -
Car05g02484 854 MobiDBLite consensus disorder prediction 112 136 - -
Car05g02484 854 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 224 245 IPR000571 GO:0046872
Car05g02484 854 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 163 185 IPR000571 GO:0046872
Car05g02484 854 SMART c3hfinal6 221 246 IPR000571 GO:0046872
Car05g02484 854 SMART c3hfinal6 160 186 IPR000571 GO:0046872
Car05g02484 854 SMART c3hfinal6 284 310 IPR000571 GO:0046872
Car05g02484 854 MobiDBLite consensus disorder prediction 1 164 - -
Car05g02484 854 MobiDBLite consensus disorder prediction 389 408 - -
Car05g02484 854 Gene3D - 278 340 - -
Car05g02484 854 ProSiteProfiles Zinc finger C3H1-type profile. 284 311 IPR000571 GO:0046872
Car05g02484 854 MobiDBLite consensus disorder prediction 314 363 - -
Car05g02484 854 MobiDBLite consensus disorder prediction 711 767 - -
Car05g02484 854 MobiDBLite consensus disorder prediction 711 727 - -
Car05g02484 854 MobiDBLite consensus disorder prediction 1 15 - -
Car05g02484 854 PANTHER ZINC FINGER CCCH DOMAIN PROTEIN-RELATED 1 853 - -
Car05g02484 854 MobiDBLite consensus disorder prediction 68 111 - -
Car05g02484 854 MobiDBLite consensus disorder prediction 565 584 - -
Car05g02484 854 MobiDBLite consensus disorder prediction 262 290 - -
Car05g02484 854 Pfam CCCH-type zinc finger 289 309 IPR041367 -
Car05g02484 854 PANTHER PROTEIN FRIGIDA-ESSENTIAL 1 1 853 - -
Car05g02484 854 Gene3D - 208 275 - -
Car05g02484 854 Gene3D - 152 207 - -
Car05g02484 854 MobiDBLite consensus disorder prediction 141 161 - -
Car05g02484 854 ProSiteProfiles Zinc finger C3H1-type profile. 220 247 IPR000571 GO:0046872
Car05g02484 854 MobiDBLite consensus disorder prediction 728 750 - -
Car05g02484 854 SUPERFAMILY CCCH zinc finger 286 309 IPR036855 GO:0046872
Car05g02484 854 ProSiteProfiles Zinc finger C3H1-type profile. 160 187 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g02484 Car-Chr5 69967253 69972210 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Car05g02484 zf-CCCH 0.00016 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g02484 - K22909 gmx:100783856 1122.46