Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g02479 ATGGCACCCGCTACCTCATCGCCGTCGTCTCCGAGACTCATCAGCTTCATCCGCCGGACGCATGCGCCGAACAACATTCGGAAACAGCCACCGGACTCGCCGAAGGAGAAGAAGTACAGGTCGATGAGTGATATATATGCGAGGGCGAAGTACGCGGTGGTGGAACGCGACGATTACGGTAACCTCATGTGCGAGCAATGTGGTTCCGGTGATCAACCGGAGGAGCTGCTTTTGTGCGACAAATGTGACAAAGGTTTTCACATGAAATGCGTTAGACCAATTGTCGTCAGAGTTCCGATTGGATCGTGGTTGTGCCCAAAGTGTTCGGGTTTGAAGAGAGTGAAAAGTTTGTCGCAGAAAAAAATACTCGATTTCTTTGGGATCAAACGCAATTCTCGAGAGTTTAAAAAGAAACGTTCTTCTGCTTCTTCTCAGGATGCTAAGAAGCGTCGGAGACGCACAAGACCTCTGGTATTACACAAGAAAAAGAGGAGACTATTACCATTTGTTCCTTCAGAAGATCCTGATAAGAGACTGAAACAAATGGCTTCCCTTGCTTCTGCTTTAACAGCATTGCATATGGAGTTCAGTGATCGCTTGACGTACTTTCCAGGAATGGCTCCTAGATCTGCTAATCGAGCTGATTTAGAAAATGGTGGCATGCAGATGCTTACTAAGGAAGATACGGAGACCTTAGAACGCTGCAGAGCTATGACTAAAAGAGGCGATTGCCCTCCCTTTATGGTCGTTTATGATTCATGTGAAGGCTATACTGTGGAGGCTGATGGCCCAATCAAAGATATGACATTTATTGCTGAATACACTGGTGATGTGGATTATATTAAGAAAAGAGAAACTGATGATTGTGATAGTATGATGACGCTGCTTCTTGCATCAGATGCTTCTAACAGTCTTGTTATCTGTGCGGATAAACGTGGAAACATTGCTCGCTTTATCAATGGCATCAACAATCATACTTTGGAAGGTAAGAAGAAGCAGAACTGTAAATGTGTGAGATACAATGTTAATGGTGAATCCCGGGTCTTTTTGGTTGCCACTCGAGATATTTCCAAGGGGGAGAGGCTTTATTATGATTATAATGGTTATGAGCATGAATACCCAACTCATCATTTTGTCTGA 1140 0.443 MAPATSSPSSPRLISFIRRTHAPNNIRKQPPDSPKEKKYRSMSDIYARAKYAVVERDDYGNLMCEQCGSGDQPEELLLCDKCDKGFHMKCVRPIVVRVPIGSWLCPKCSGLKRVKSLSQKKILDFFGIKRNSREFKKKRSSASSQDAKKRRRRTRPLVLHKKKRRLLPFVPSEDPDKRLKQMASLASALTALHMEFSDRLTYFPGMAPRSANRADLENGGMQMLTKEDTETLERCRAMTKRGDCPPFMVVYDSCEGYTVEADGPIKDMTFIAEYTGDVDYIKKRETDDCDSMMTLLLASDASNSLVICADKRGNIARFINGINNHTLEGKKKQNCKCVRYNVNGESRVFLVATRDISKGERLYYDYNGYEHEYPTHHFV 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g02479 379 SUPERFAMILY FYVE/PHD zinc finger 30 109 IPR011011 -
Car05g02479 379 ProSiteProfiles SET domain profile. 245 367 IPR001214 GO:0005515
Car05g02479 379 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ATXR5 24 377 - -
Car05g02479 379 ProSiteProfiles Zinc finger PHD-type profile. 61 111 IPR019787 -
Car05g02479 379 MobiDBLite consensus disorder prediction 1 37 - -
Car05g02479 379 CDD PHD_RSF1 63 108 - -
Car05g02479 379 Pfam SET domain 278 367 IPR001214 GO:0005515
Car05g02479 379 Gene3D SET domain 150 379 IPR046341 -
Car05g02479 379 MobiDBLite consensus disorder prediction 136 155 - -
Car05g02479 379 SUPERFAMILY SET domain 233 367 IPR046341 -
Car05g02479 379 Pfam PHD-finger 63 109 IPR019787 -
Car05g02479 379 SMART PHD_3 63 109 IPR001965 -
Car05g02479 379 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 22 123 IPR013083 -
Car05g02479 379 PANTHER HISTONE ACETYLTRANSFERASE 24 377 - -
Car05g02479 379 ProSitePatterns Zinc finger PHD-type signature. 64 108 IPR019786 -
Car05g02479 379 CDD SET_ATXR5_6-like 242 379 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g02479 Car-Chr5 69929063 69933163 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g02479 63 143 C2H2 Transcription Factor Family AT3G01460 31.707 2.07e-09 57.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Car05g02479 SET 1.5e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g02479 K24406 - gmx:100785817 585.489