Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g02478 ATGGCTACCACTACTGCTCCATCCCGTCAGCTTTCTCAAAAGGAAGCTGACATCCAGATGATGTTGGCTGCTGATGTTCACCTCGGTACCAAGAACTGTAACTTCCAGATGGAGCGTTACATTTTTAAACGCCGCAATGATGGTATTTATATCATAAATCTTGGAAAGACATGGGATAAACTTAACCTTGCTGCTAGGGTAATTGTTGCCATTGAGAACTCTCAGGACATCATTGTTCAATCCGCAAGACCTTATGGACAAAGAGCTGTTCTCAAATTTGCTCAGTACACTGGAGCTCATGCTATTGCTGGAAGGCACACTCCTGGAACTTTCACTAATCAGCTACAAACTTCCTTCAGTGAGCCAAGACTCCTTATTCTCACAGATCCAAGAACTGATCACCAGCCTATCAAGGAAGCTGCTCTTGGGAATATTCCCACAATTGCTTTCTGTGACACCGATTCCCCTATGAATTATGTTGACATTGGAATTCCGGCTAACAACAAGGGGAAGCACAGCATTGGGTGTCTCTTTTGGCTTTTGGCTAGGATGGTGTTGCAGATGCGTGGCACTATTAGACCTGGCCTCAAATGGGATGTTATGGTCGATCTATTCTTCTACAGAGAACCTGAAGAGGCCAAGCAGCCAGAGGAAGATGAAGTTGCTGCACCAGATTACGCCATTGCTGACTTCAATGTATCTGCTATTCCATCCGACGGTCAATGGCCCGCAGCAATTGATCAACCATGGACTGACGCTGTTCCACAACCTATTCCAGCAGTTCCTGCAGTCAACTGGGCAGCCCCAGAAGCTGTTGCAGGAGACTGGGGTGAAGCTGTTCCACCACCACAACAAATTCCTACAGCTGGAATTGAATCTGTGCCAGCAACAGGATGGGAATAA 903 0.4651 MATTTAPSRQLSQKEADIQMMLAADVHLGTKNCNFQMERYIFKRRNDGIYIINLGKTWDKLNLAARVIVAIENSQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMNYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGLKWDVMVDLFFYREPEEAKQPEEDEVAAPDYAIADFNVSAIPSDGQWPAAIDQPWTDAVPQPIPAVPAVNWAAPEAVAGDWGEAVPPPQQIPTAGIESVPATGWE 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g02478 300 ProSitePatterns Ribosomal protein S2 signature 2. 122 146 IPR018130 GO:0003735|GO:0005840|GO:0006412
Car05g02478 300 Gene3D - 17 223 - -
Car05g02478 300 PANTHER 40S RIBOSOMAL PROTEIN SA 9 290 IPR005707 GO:0003735|GO:0006412|GO:0015935
Car05g02478 300 Hamap 40S ribosomal protein SA [rps-0]. 5 279 IPR027498 GO:0003735|GO:0006412|GO:0015935
Car05g02478 300 TIGRFAM uS2_euk_arch: ribosomal protein uS2 13 209 IPR005707 GO:0003735|GO:0006412|GO:0015935
Car05g02478 300 CDD RPS2 21 187 IPR001865 GO:0003735|GO:0005840|GO:0006412
Car05g02478 300 PRINTS Ribosomal protein S2 signature 18 36 IPR001865 GO:0003735|GO:0005840|GO:0006412
Car05g02478 300 PRINTS Ribosomal protein S2 signature 48 57 IPR001865 GO:0003735|GO:0005840|GO:0006412
Car05g02478 300 PRINTS Ribosomal protein S2 signature 97 114 IPR001865 GO:0003735|GO:0005840|GO:0006412
Car05g02478 300 PRINTS Ribosomal protein S2 signature 122 139 IPR001865 GO:0003735|GO:0005840|GO:0006412
Car05g02478 300 PRINTS Ribosomal protein S2 signature 139 150 IPR001865 GO:0003735|GO:0005840|GO:0006412
Car05g02478 300 PRINTS Ribosomal protein S2 signature 160 174 IPR001865 GO:0003735|GO:0005840|GO:0006412
Car05g02478 300 MobiDBLite consensus disorder prediction 277 300 - -
Car05g02478 300 SUPERFAMILY Ribosomal protein S2 13 203 IPR023591 -
Car05g02478 300 Pfam Ribosomal protein S2 120 185 IPR001865 GO:0003735|GO:0005840|GO:0006412
Car05g02478 300 Pfam Ribosomal protein S2 21 115 IPR001865 GO:0003735|GO:0005840|GO:0006412
Car05g02478 300 PANTHER 40S RIBOSOMAL PROTEIN SA 9 290 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g02478 Car-Chr5 69912586 69914349 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g02478 8 300 Cytoplasmic Ribosomal Protein Gene Family AT3G04770 73.401 1.15e-151 424
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g02478 K02998 - gmx:100805318 526.939