Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g02476 ATGGTTAGAGAAAGAGTTGTTGATCTATGCATCACTGTTCCCACCTTCTTCAAATGTCCAATCTCACTCGATGTTATGAAATCCCCTGTTAGCCTCTGCACCGGAGTCACCTACGACCGTTCCAGCATCCAACGCTGGTTAGACGATGGTAATAACACTTGTCCTGCTACCATGCAGATTCTCCACACTAAGGATTTTGTTCCTAACCGCACTCTACATAGTCTCATCCAGATCTGGACCGACTCGGTTCACCACCGGGTCGACCCGCCCGTTTCACCTTCTGTCCTTTCTAAGGACCAAATCCTACAAGCCATCAACGAATTAGGCTCCTCCGGTTCTAACCGGTTCGGTTCAATTACAAAAACGGTTCGTTTCGCTCAAGATTCCGATCAGAACCGAGCGTTTCTCGCGAAATTAGACGGTTTCGTTCCTTTACTGGTTAGTTTTCTCGACAATGTCGACGGGAGCGTTGAATTTCTCGAACAAATCGTAACGGCGTTAGGTTTGGTTCTTGATAAAATCGAAGATCGCGAGGAGTTAAAAAACCATGTGTTGAAGGGAAAGAAACGGTTATGCTTAGATTCGATGCTTGTCGTTTTAAAACGAGGAAGCACCGATTCAAAAATCGCAACCGCTAGGGTTCTGAAATTCATCTCTCTCGACGCCGAGTCACAGCTTCTAATAGGGGAGAACGAAACTTTGATAACCGAATTGCTGAATTTAGCGACGCCGGAAAAGGATCCGAAGCTAATTGAAAATTGCCTAGCGTGTTTGGTGGCAATTTCAAAGCCGAAACGTAATAAACTGAAGCTGGTGAAAATTGGAGTAATTAAGAAGTTGTCGAAGTTACTGACGGAGTCTAACACGAGCGTGACGGTAGTGGAGAAGGCGTTGAAGCTAGTTGAAACGGCGTCGTCGACGAGCGAAGGGAGGAAGGAGATGTGCGAAGACGCGGCGTTTGTGGCGGCGATACTGAACAAGGTTCTGAAAGTTTCCAACGTGGCGACGGAACACGCGGTGACGACGCTGTGGAGTGTGTGTTATCTGTTTAGGGATCAGAAAGCGCAAGAAGCGGTTACGCAAGCGAATGGATTAACGAAGATATTGTTGATGATGCAGAGTAATTGTTCCCCTCAGGTTCGTCAAATGTGTACGGATTTGCTCAAGATTTTTCGGGTTAACTCTAAATCATGCCTTTCTTCGTATGAAACCAAGACCACGCATATCATGCCATTTTGA 1239 0.4625 MVRERVVDLCITVPTFFKCPISLDVMKSPVSLCTGVTYDRSSIQRWLDDGNNTCPATMQILHTKDFVPNRTLHSLIQIWTDSVHHRVDPPVSPSVLSKDQILQAINELGSSGSNRFGSITKTVRFAQDSDQNRAFLAKLDGFVPLLVSFLDNVDGSVEFLEQIVTALGLVLDKIEDREELKNHVLKGKKRLCLDSMLVVLKRGSTDSKIATARVLKFISLDAESQLLIGENETLITELLNLATPEKDPKLIENCLACLVAISKPKRNKLKLVKIGVIKKLSKLLTESNTSVTVVEKALKLVETASSTSEGRKEMCEDAAFVAAILNKVLKVSNVATEHAVTTLWSVCYLFRDQKAQEAVTQANGLTKILLMMQSNCSPQVRQMCTDLLKIFRVNSKSCLSSYETKTTHIMPF 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g02476 412 Gene3D - 98 407 IPR011989 -
Car05g02476 412 CDD RING-Ubox_PUB 17 59 IPR045210 -
Car05g02476 412 ProSiteProfiles U-box domain profile. 12 86 IPR003613 GO:0004842|GO:0016567
Car05g02476 412 PANTHER WDSAM1 PROTEIN 8 412 IPR045185 GO:0061630
Car05g02476 412 SMART arm_5 263 306 IPR000225 GO:0005515
Car05g02476 412 SMART arm_5 129 172 IPR000225 GO:0005515
Car05g02476 412 SMART arm_5 352 393 IPR000225 GO:0005515
Car05g02476 412 SMART Ubox_2 16 79 IPR003613 GO:0004842|GO:0016567
Car05g02476 412 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 12 86 IPR013083 -
Car05g02476 412 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 27-RELATED 8 412 - -
Car05g02476 412 SUPERFAMILY RING/U-box 11 82 - -
Car05g02476 412 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 275 319 IPR000225 GO:0005515
Car05g02476 412 Pfam U-box domain 13 81 IPR003613 GO:0004842|GO:0016567
Car05g02476 412 SUPERFAMILY ARM repeat 124 394 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g02476 Car-Chr5 69872967 69874455 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g02476 8 412 U-box Gene Family AT5G64660 52.871 2.41e-142 410
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g02476 - - gmx:100799627 560.066
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car06g00705 06 7057857 7059591 Car05g02476 05 69872967 69874455 PCT