Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g02470 ATGTATGCTACTACTTCCTTTGTTTCACCACTCCTCCATGAACTTGTTGAGAATTTCCACTCAAGAAGGTTGCTCCTTCACTCTCCAATTAACCAACCATCCAACCCTCCAATTTCCACAAACAACCATGATTCAACTTCAGAATCATCCTATCTTGGAGATGGTAATTTTGATGCAAATGTTATTATGGTACTCTCTGTCCTATTATGTGCTCTTATTTGTTCACTAGGTTTAAACTCAATTATAAGATGTGCACTAAGGTGTTCCAATTTAGTCATGATGAGTAGCGATCACTTGGAGAACAATACTGCGGTTCGAGCGAAAAACACTGGAATAAAAAAGAAAGCTCTCAAGTCTTTCACCACAATAAGTTACTCACCAGAATTAAACTTGTCGAGTTTGGATTCAGAGTGTGTGATATGTCTTTCAGAATTCAGTAACGGCGATAAAGTGCGCCTTTTGCCTAAATGTAACCACGGATTTCATGTTCGCTGCATTGACAAATGGCTAAGCTCGCACTCGTCTTGTCCTAAGTGTAGACAATGCCTTATTGAGACATGTAAAAAGATTGTTGGGTCACAAGGTAGTTCATCCCAATTAGTGCCAGAAACAATTGTAACTATAGCACCACTTGAGCCAGAAGGTTTGGTGCGTAATTATAGGGAGGTAATTAGTTGA 678 0.3923 MYATTSFVSPLLHELVENFHSRRLLLHSPINQPSNPPISTNNHDSTSESSYLGDGNFDANVIMVLSVLLCALICSLGLNSIIRCALRCSNLVMMSSDHLENNTAVRAKNTGIKKKALKSFTTISYSPELNLSSLDSECVICLSEFSNGDKVRLLPKCNHGFHVRCIDKWLSSHSSCPKCRQCLIETCKKIVGSQGSSSQLVPETIVTIAPLEPEGLVRNYREVIS 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g02470 225 Pfam Ring finger domain 137 180 IPR001841 -
Car05g02470 225 SUPERFAMILY RING/U-box 116 185 - -
Car05g02470 225 ProSiteProfiles Zinc finger RING-type profile. 138 180 IPR001841 -
Car05g02470 225 PANTHER RING-H2 FINGER PROTEIN ATL78 1 223 IPR044602 GO:0016567|GO:0016740
Car05g02470 225 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 223 - -
Car05g02470 225 SMART ring_2 138 179 IPR001841 -
Car05g02470 225 MobiDBLite consensus disorder prediction 30 49 - -
Car05g02470 225 CDD RING-H2_PA-TM-RING 137 180 - -
Car05g02470 225 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 97 184 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g02470 Car-Chr5 69828435 69829429 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g02470 23 184 C3H Transcription Factor Family AT3G10910 44.643 1.82e-41 137
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g02470 K19040 - gmx:100807227 314.694
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car06g00715 06 7144100 7144948 Car05g02470 05 69828435 69829429 PCT