Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g02462 ATGGATTTGGACGATTTCCGATCCATATTGGATACGGCGGGCGTTGACGTGTGGATGTTCATCGACACCGCAATATCCGTTGCTTCTCAAGATAACGCCGCCGAGTTAAAGCGCCGAAGAGACGGAATCGTCGAGCGTCTCTACGCTGCCACGACGTCTCCTCCGCTTTGCCAAAATTGCGACGGCGGTAACCGTCAAAACATCAACCAAATCAAGAAACAGAGCAGTCCGAGTCTAAGCCCCGAACGACAACAACATCAACGCCGCGGCGGTGCTTCCTCACCTCCAACGCCGCAATCTCTCGGAAACGATAACGACGATGACGAGGAATTAGATCCTTACGGCGGTTTGTTCGAAGATGAACAGAAGAAGATTCTAGAAATTAAAGAACTTCTAGAAGATCCTCGCCAGtctgaAGATTCATTGTTGGAGTTACTGCAAAATCTGGCGGATATTGATATTACATTTCAAGAGTTGAAGGAGACTGATATAGGGAGGAACGTGAATCAGTTGCGGAAACATCCATCTAACGATGTTCGCAGATTGGTGAAGCTACTTGTCAAGAAGTGGAAAGAAATTGTAGATGAGTGGGTGAGGCTGAATCCACAAGGAGGAAACAACACTCTCATGGCTGATGGAGACTCTCCTCTTCAGAAAACCAACCAAAATGGGCATCATCATCAGATTCCTGATTTTGCGTATTCTCCAAATCCACATAACGGTAGCTCTGGTTCTGACCGTAACAACTCGGaagcagaaccaaaaccgaaaccaaagccagttcctcgcaaagaaccacctccaaaactaaaaccaTCACCCCCAGTTACTGCCCCTACTTCCACTCTTCAAAACAGACAGAGAGAACAGAAAGAGAGCAATTTTGATGCGGAGAGGCTTGCTTCTGCAAGGAAACGGCTTCAAGCAAACTACAAAGAGGCTGAAAATGCCAAAAAGCAAAGAACAATTCAGGTGATGGACATCCATGAGTTACCTAAGTCAAAATCCAAGAATGTTTTTTTTGCAAAGAACAAAGGTGGTGGCAGTTCTCAGGGAAGGCAGCACTGGTGA 1071 0.4351 MDLDDFRSILDTAGVDVWMFIDTAISVASQDNAAELKRRRDGIVERLYAATTSPPLCQNCDGGNRQNINQIKKQSSPSLSPERQQHQRRGGASSPPTPQSLGNDNDDDEELDPYGGLFEDEQKKILEIKELLEDPRQSEDSLLELLQNLADIDITFQELKETDIGRNVNQLRKHPSNDVRRLVKLLVKKWKEIVDEWVRLNPQGGNNTLMADGDSPLQKTNQNGHHHQIPDFAYSPNPHNGSSGSDRNNSEAEPKPKPKPVPRKEPPPKLKPSPPVTAPTSTLQNRQREQKESNFDAERLASARKRLQANYKEAENAKKQRTIQVMDIHELPKSKSKNVFFAKNKGGGSSQGRQHW 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g02462 356 MobiDBLite consensus disorder prediction 336 356 - -
Car05g02462 356 MobiDBLite consensus disorder prediction 201 303 - -
Car05g02462 356 MobiDBLite consensus disorder prediction 250 266 - -
Car05g02462 356 Pfam TFIIS helical bundle-like domain 145 194 IPR017923 -
Car05g02462 356 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26C-RELATED 1 356 - -
Car05g02462 356 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 118 205 IPR035441 -
Car05g02462 356 Coils Coil 297 324 - -
Car05g02462 356 MobiDBLite consensus disorder prediction 235 249 - -
Car05g02462 356 SMART TFS2_5 125 196 IPR003617 GO:0005634
Car05g02462 356 MobiDBLite consensus disorder prediction 54 102 - -
Car05g02462 356 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26C-RELATED 1 356 IPR044790 -
Car05g02462 356 MobiDBLite consensus disorder prediction 201 228 - -
Car05g02462 356 CDD TFIIS_I 122 195 - -
Car05g02462 356 MobiDBLite consensus disorder prediction 54 115 - -
Car05g02462 356 MobiDBLite consensus disorder prediction 289 303 - -
Car05g02462 356 ProSiteProfiles TFIIS N-terminal domain profile. 120 197 IPR017923 -
Car05g02462 356 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 123 207 IPR035441 -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Car05g02462 Med26 2.9e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g02462 - - gmx:100804034 492.656