Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g02458 ATGGATTTCGATGAGTACGATTACTTGGAGAAGACAGTAGAGGAACAAGAAGACAGAGACTCTTCTAAGAAGAAGAAGGAAAGCAGCGACAAGACCGAAAGAAGCTACAGAAAGCGCGACGAGATCGAAGAGGGCATCGAAGAGAAGAGGAGCAGGAGGTCCAAGGACGATGACGAACATGTCTCTAAGAAGGATAGAGATCGTGATGGTGACCGCGATAAGGAGCGTCATAGGAGTGGCagggatagggatagagacagagagagtgagaggagtagcagagacagagatagagagagggagaaggatagggatagagagaaagagaggagagagaaggataaagagagggaattgagggagagggagaaggagagagaaaagtcccggagcaggaggagtgggagtcattctgagcgagatagagagagagaaagggatgagagagaaagGTCCCGGAGCCGGAGGAGTAGAAGTCGTTCTGAGCGAGACAGAGAGAAAGAACGGGAGGAAAAAGAGAGGTCTCGGAGGAGCAGAAGTCGTTCTGAGCGCgatagagatagagaacgggatttcgatagagatagCCGGAGATTTAGGGAGAAGAAAGAAGCTTTGGAGCCTGAGGCAGATCCAGAAAGGGATCAAAGAACTGTTTTTGCCTATCAGATGCCCTTAAAGGCAACAGAAAGGGATGTTTATGAATTCTTCTCAAAAGCTGGCAAGGTGAGAGATGTTCGTCTGATCATGGATAGGAACTCAAGACGATCTAAAGGAGTTGGGTATATTGAGTTTTATGATGCAATGTCGGTGCCAATGGCAATTGCTCTTTCTGGTCAACTTCTTCTTGGACAACCTGTAATGGTCAAACCTTCTGAGGCTGAAAAAAACCTAGTTCAATCTAATACTACCGCTGGAGCTGCTGGTGTGGTAGGACCATATGGAGCTGTAGACAGAAAGTTGTATGTGGGGAACCTTCACTTCAATATGACTGAGAGTCAGTTGAGAGAGATTTTTGAGCCATTTGGTACTGTGGAGCTCGTGCAATTGCCTCTTGACTTGGAGACAGGACATTGCAAGGGTTTTGGGTTTATTCAATTTGCCCATCTAGAGCATGCCAAGGCTGCCCAGAGTTTAAATGGAAAATTGGAAATTGCTGGCAGAACAATCAAGGTTTCGTCTGTGGCAGACCATGTTGGAAGCCAAGATACGACAGCAAAGTCTGCAGATTTTGATGATGATGAAGGTGGATTGGCTTTAAATGCCCAATCAAGAGCATTACTTATGCAGAAGCTGGATCGCTCTGGAATTGCCGCAAGCATTGGTTTACCCATTATGAATGGGTCAGCTCCTGCTCAGCAAGCTATTAGCTTGCCTATCGGTAATCCTGGATTAATACCAGCACTATCTCTACCAACTCAAATTATGCCCACCCAAGTGGCCGAACCTGTTGGTACCCCCAGCGAGTGTTTACTGTTGAAGAATATGTTTGACCCAACCACTGAGACAGAGCCTGATTTTGATCTAGACATCAAAGAGGATGTAGAAGAAGAGTGTTCTAAATATGGGCGGGTGAAGCATATCTATGTCGACAAAAAAAGTGCAGGTTTTGTGTATTTGATGTTCGAAACAGTAGAAGCAGCAGCTGCTGCTCAGCGTGCAATGCACATGAGGTGGTTTGCACGCAGGTTAATTGCAGCTATTTACATGCAACCTCAGGTATATGAAGCTAAGTTTAAAGGGGAGGACAGGAATGATCCAGCCTCGCTTCCATCTTACTCACGCTCAACACAAACGATGGATAGGTATCAGAGGGTGGAGAAGCCCAAGGCAGATACTCCTATAAACGAGAACGAGATCCGCATTACTACTCAAGGAAGGATGAGAAATTATATCACCTATGCCACCACTCTTTTTCAAGAGAAAGGATCTGATGAAATTGTTCTTAAAGCAATGGGACGTGCAATCAATAAGACTGTAATGATTACTGAGCTAATTAAGAGAAGGATTGTTAGTCTGCATCAGATCACTCAAATTGGATCAACTGATATAACCGACACATGGGAGCCACTTGAAGAGGGCCTTCTTCCTTTGGAGACTACTCGTCATGTTTCAATGATCACAATTACCTTGTCGAAGAAAGAGCTCGATACATCCTCCACAGGATATCAACCTCCTCTTCCAGCTGATCAAGTTAAACCTTTAAATGAATATGAAGAGGAAGCAGAAGGCTCACCAAGGATGCgaggaagggggcgtggtcgtggaaggggcagaggtagaggtagagGAATGTACAATGGGGGTATGGAATATGGTGATGGTTGGGATGGTGGACGTGGCTTTGGAGGCCGAGGGCGTGGCCGCTCGTGGGGCCGTGCTTTCCAAGGACGGGGACGAGGAGGCTATGGTGCCCAACCAGTTGGGTATTACGACAATGGTGAATATGATGCACCACCCGCCCCTCGTGggcgaggtcgtggaaggggaagaggtcgtggtcgtggacgtgatgcaggccgtggAGCACCTGCTTAG 2538 0.398 MDFDEYDYLEKTVEEQEDRDSSKKKKESSDKTERSYRKRDEIEEGIEEKRSRRSKDDDEHVSKKDRDRDGDRDKERHRSGRDRDRDRESERSSRDRDREREKDRDREKERREKDKERELREREKEREKSRSRRSGSHSERDRERERDERERSRSRRSRSRSERDREKEREEKERSRRSRSRSERDRDRERDFDRDSRRFREKKEALEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVPMAIALSGQLLLGQPVMVKPSEAEKNLVQSNTTAGAAGVVGPYGAVDRKLYVGNLHFNMTESQLREIFEPFGTVELVQLPLDLETGHCKGFGFIQFAHLEHAKAAQSLNGKLEIAGRTIKVSSVADHVGSQDTTAKSADFDDDEGGLALNAQSRALLMQKLDRSGIAASIGLPIMNGSAPAQQAISLPIGNPGLIPALSLPTQIMPTQVAEPVGTPSECLLLKNMFDPTTETEPDFDLDIKEDVEEECSKYGRVKHIYVDKKSAGFVYLMFETVEAAAAAQRAMHMRWFARRLIAAIYMQPQVYEAKFKGEDRNDPASLPSYSRSTQTMDRYQRVEKPKADTPINENEIRITTQGRMRNYITYATTLFQEKGSDEIVLKAMGRAINKTVMITELIKRRIVSLHQITQIGSTDITDTWEPLEEGLLPLETTRHVSMITITLSKKELDTSSTGYQPPLPADQVKPLNEYEEEAEGSPRMRGRGRGRGRGRGRGRGMYNGGMEYGDGWDGGRGFGGRGRGRSWGRAFQGRGRGGYGAQPVGYYDNGEYDAPPAPRGRGRGRGRGRGRGRDAGRGAPA 845
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g02458 845 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 321 391 IPR000504 GO:0003723
Car05g02458 845 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 512 564 IPR000504 GO:0003723
Car05g02458 845 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 224 286 IPR000504 GO:0003723
Car05g02458 845 PANTHER CC1-LIKE SPLICING FACTOR 1 581 - -
Car05g02458 845 Coils Coil 105 132 - -
Car05g02458 845 SMART rrm1_1 320 393 IPR000504 GO:0003723
Car05g02458 845 SMART rrm1_1 218 290 IPR000504 GO:0003723
Car05g02458 845 SMART rrm1_1 490 567 IPR000504 GO:0003723
Car05g02458 845 Gene3D - 210 303 IPR012677 -
Car05g02458 845 SUPERFAMILY RNA-binding domain, RBD 484 571 IPR035979 GO:0003676
Car05g02458 845 Coils Coil 158 185 - -
Car05g02458 845 Gene3D - 315 411 IPR012677 -
Car05g02458 845 Pfam Alba 618 682 IPR002775 GO:0003676
Car05g02458 845 Gene3D - 484 587 IPR012677 -
Car05g02458 845 Gene3D - 613 717 IPR036882 GO:0003676
Car05g02458 845 TIGRFAM SF-CC1: splicing factor, CC1-like family 94 579 IPR006509 GO:0003723|GO:0005634|GO:0006397
Car05g02458 845 SUPERFAMILY RNA-binding domain, RBD 318 393 IPR035979 GO:0003676
Car05g02458 845 MobiDBLite consensus disorder prediction 12 194 - -
Car05g02458 845 MobiDBLite consensus disorder prediction 793 845 - -
Car05g02458 845 Pfam linker between RRM2 and RRM3 domains in RBM39 protein 412 507 IPR029123 -
Car05g02458 845 MobiDBLite consensus disorder prediction 1 194 - -
Car05g02458 845 CDD RRM1_RBM39_like 218 290 - -
Car05g02458 845 PANTHER SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED 1 581 - -
Car05g02458 845 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 319 397 IPR000504 GO:0003723
Car05g02458 845 SUPERFAMILY AlbA-like 615 728 IPR036882 GO:0003676
Car05g02458 845 MobiDBLite consensus disorder prediction 734 750 - -
Car05g02458 845 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 217 294 IPR000504 GO:0003723
Car05g02458 845 MobiDBLite consensus disorder prediction 716 765 - -
Car05g02458 845 CDD RRM3_RBM39_like 488 570 - -
Car05g02458 845 SUPERFAMILY RNA-binding domain, RBD 210 296 IPR035979 GO:0003676
Car05g02458 845 CDD RRM2_RBM23_RBM39 321 393 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g02458 Car-Chr5 69689071 69699473 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g02458 318 392 Eukaryotic Initiation Factors Gene Family AT4G34110 39.474 1.42e-07 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g02458 K13091 - gmx:100802446 692.189
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car06g00726 06 7239419 7245946 Car05g02458 05 69689071 69699473 PCT