Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g02456 ATGTGTATGTTAAAGGTGGCGAATCCAAGAGACAAAGTTGTTGTGAAGACTGAATTCAATGATCCTACATTGTCAACGGAAATGGGATTTCTATTTCCAGGTATGAATAGGGAGAGAGAGATGAATGCAATGATTTCAGCTTTGACTCACATAGTCTCTGGAGATGTTCCAATAAGTGGTAGTGATCATAATCATAGTACAAATATTGCTTTCACACCAAACATTAATATGtcttctccttcttcttcatcttctaattatgttgctagttcttctCTCAAGAGAACTAGGGAAGATGAATTCTTACACCATCGTGGTATTGCTACCTCCCCTGCTTTGCCAACAACAACAAATAGAGAAAGTTCAAGCAATAGGACAAGAACAATAGCAATAGCAACAAGAGAAATGGGAAATGCAGTATACGAATATAGAAGAACAGAGAGCATAGTAAGAGAAGGTGAAGAGAAGAGAAAATACAGAGGAGTAAGACAGAGACCATGGGGAAAATGGGCTGCAGAAATAAGAGATCCATTCAAAGCAGCAAGAGTATGGTTAGGTACATTTGAAACAGCTGAAGCAGCTGCTAGAGCATACGATGAAGCTGCTCTTCGTTTTAGAGGAAACAAAGCAAAACTTAATTTCCCCGAAAATGTTACACTTCGACAACTACCTCCCACAACAACTCAATGGAACATTTCTAATTCACCAACTTCACTTGTTTCTATTACCACCTCCACTGACCCTATTGTTCACACTCAACCTCTTCCAACTTCTCAACTTTCAACCAACTTTTATCAACATTTTCATATTCATGCAGGGAatgtttatgatgatgatgatgatgatAAGAAGGTTGTTATGACGTCTACTATGGcttctcatcttcaaccttcttcatcgtcgtctgcttcttcttctATACAGGCCAATTCTTCACTTTCTTCATTTTATTCTACACACTTACCACCTTGGTCAGCTTCCTCTCACAGCTCTTCTTCCTCTCGATGA 1008 0.3472 MCMLKVANPRDKVVVKTEFNDPTLSTEMGFLFPGMNREREMNAMISALTHIVSGDVPISGSDHNHSTNIAFTPNINMSSPSSSSSNYVASSSLKRTREDEFLHHRGIATSPALPTTTNRESSSNRTRTIAIATREMGNAVYEYRRTESIVREGEEKRKYRGVRQRPWGKWAAEIRDPFKAARVWLGTFETAEAAARAYDEAALRFRGNKAKLNFPENVTLRQLPPTTTQWNISNSPTSLVSITTSTDPIVHTQPLPTSQLSTNFYQHFHIHAGNVYDDDDDDKKVVMTSTMASHLQPSSSSSASSSIQANSSLSSFYSTHLPPWSASSHSSSSSR 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g02456 335 PANTHER DNA-BINDING DOMAIN 36 332 IPR044808 GO:0003700|GO:0009873
Car05g02456 335 CDD AP2 158 217 IPR001471 GO:0003700|GO:0006355
Car05g02456 335 Pfam AP2 domain 158 207 IPR001471 GO:0003700|GO:0006355
Car05g02456 335 PRINTS Ethylene responsive element binding protein signature 159 170 IPR001471 GO:0003700|GO:0006355
Car05g02456 335 PRINTS Ethylene responsive element binding protein signature 181 197 IPR001471 GO:0003700|GO:0006355
Car05g02456 335 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF110 36 332 - -
Car05g02456 335 SMART rav1_2 158 221 IPR001471 GO:0003700|GO:0006355
Car05g02456 335 ProSiteProfiles AP2/ERF domain profile. 158 215 IPR001471 GO:0003700|GO:0006355
Car05g02456 335 SUPERFAMILY DNA-binding domain 158 216 IPR016177 GO:0003677
Car05g02456 335 Gene3D AP2/ERF domain 157 217 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g02456 Car-Chr5 69663466 69665181 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g02456 156 220 AP2-EREBP Transcription Factor Family AT5G61890 84.615 4.03e-34 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Car05g02456 AP2 2.4e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g02456 - - mtr:MTR_3g095190 365.54