Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g02452 ATGAAACCCCTGTATATCAccaccaccaccacctctctctttctcctcctctctctctttctcctccacttatcaccatcccactcttcctctcAAAAAGACCCAACTACTTCACAACTTATCAACTTCAAAGAAACTCTCCCAAACCCATCTCTTCTCCATGATTGGCTACCAAACCAAAACCCATGTTCATTCACTGGTATCACCTGTAACCAAACCACCTTAACTTCCATAGACCTCACCTCTATCCCACTCAACACAAATCTCACCGTTATCACCACTTATCTTCTCACCCTCGACCACCTTCAAATCCTCACCCTTAAGTCCACTAACCTCACTTCCTCTCCCATTTCCCTCTCCCATTTTTTCAAGTGTAGTTCCTCACTCACTACCATAGATCTATCACTAAACACTTTCTCTGGTCCCTTCTCTCAGTTCACCTTTCTTTCCTCTTGCTCAGCACTTCAATCTCTTAACCTCTCCAACAACCTTCTCGAATTTGATTCTCCTAAGTGGAGACTCAGTTCAACTCTTCAAGCTCTTGACCTTTCTTACAACAAGTTTTCCGGTCCTAATTTTTTCCCTTGGATCTTCAACCATGAATTACAGCTTTTATCTCTCAGAGGAAACAAAATCACTGGCGAAACCGATTTCTCCGGTTACACTAAACTCCGTTATTTAGACATTTCTTCAAACAATTTTTCCGTTTCAATTCCTTCTTTCGGTGACTGTTCCTCTCTTCAACACCTTGACCTCTCTGCAAACAAGTACTTCGGCGACATTACCGGAACTCTCTCACCTTGCCAAAACCTCCTTCATCTCAACCTCTCCGGTAATCAGTTCACCGGTCCGGTTCCTTCACTCCCCTCCGGTTCGCTACAGTTCCTATACCTCGCCGCAAATCACTTCGCCGGAAAAATTCCGGCGCGTCTTGCAAGCCTCTGCTCAACCTTAGTTGAACTCGATCTCTCTTCCAACAACCTCACCGGACCTATCCCCGGAGAGTTCGGCGCGTGCTCTTTGTTGAAATCCTTCGACATATCGAGCAACAAATTCGCCGGTGAACTTCCGATGGAAGTTTTAACAGAGATGAAAAACTTAAAAGACCTTGCGGTAGCGTTTAACCACTTCGTAGGTCCACTCCCGGTGTCACTGTCAAAGCTAACGGGTTTAGAATCGTTAGATCTGAGTTCTAATAACTTCACCGGTACAATACCTAGGTGGCTTTGCGAAGAAGAATCAGGGAATAATTTGAAGGAACTTTACCTACAAAATAACGGTTTCACGGGTTTTATTCCACCAACGCTTGGTAACTGTTCAAACCTCGTTGCTCTTGATTTAAGCTTCAACTTCCTCACGGGAACCATTCCTCCAAGTTTAGGTTCTCTTTCGAAGCTTCGTGATTTAATCATGTGGCTGAATCAGCTTCACGGTGAAATTCCTCAAGAGCTTCAAAACATGGAGAGTCTTGAGAATTTGATTCTGGATTTCAATGAGTTGAGTGGAAGCATTCCCTCAGGGCTAATGAAGTGCACTAAGCTTAATTGGATCTCACTCTCCAATAACAGGCTTTCCGGCGAGATTCCTCCGTGGATTGGGAAGCTCAATAATTTGGCTATATTGAAGTTGAGCAATAACTCTTTCTCTGGGAAGATTCCACCGGAGTTAGGAGATTGCCCTAGCTTGATATGGTTAGATCTGAATACAAATAATCTTACAGGACCAATACCTCCTGAGTTGTTCAAACAATCGGGGAAAATCGCGGTTAATTTCATTAGCGGGAAGACGTACGTTTACATTAAAAATGATGGTAGTAAAGAATGTCACGGGGCAGGGAACTTGCTGGAATTTGCAGGGATAAGTCAGCAACAATTGAACAGGATTTCAACAAGAAACCCTTGCAATTTCACTAGGGTTTATGGAGGTAAGCTTCAGCCAACGTTTAACCATAATGGTTCAATGATCTTTTTGGATATTTCACACAATTATTTGTCTGGTACTATTCCTTTGGAAATTGGTGAAATGTACTATCTCTACATTTTGAATTTGGGCCATAATAATATATCTGGTAACATTCCCCAAGAGCTTGGTAAGATGAAGAATCTCAATATACTTGATCTTTCATATAATTTGCTAGAAGGTCAAATTCCTCAACCCTTGACAGGGCTTTCATTGCTCACGGAGATTGATTTGTCCAACAATTATCTCTCTGGATTGATTCCAGAGTATGGTCAATTCGATACTTTTCCGGCTGTGAAATTCATGAACAACTCTGGTCTATGCGGGGTTCCTCTTCCTCCGTGTGAGGCATACGGCGGAGGAGCAGGTGAGAGTTTGCAACGTCAGAAGTCTCATAGGAGACAAGCATCTCTTGCAGGAAGTGTTGCAATGGGGTTGCTTTTCGCACTTTTCTGCATTGTTGGTCTGGTTATTATTGCCATTGAGACAAGAAAGAGGAGGAAGAAAAAGGAGGCTGCCATTGATGGCTTCATTGACAATTCTCATTCTGGGAATGCCAATGTCAGCTGGAAACTGACCACTGCTCGGGAAGCTCTCAGCATAAACCTTGCAACATTTGAAAAGCCTCTACGAAAGCTCACTTTTGCGGATCTTCTGGAGGCCACCAATGGCTTTCACAATGACAGTCTCATTGGTTCTGGCGGTTTCGGCGACGTGTATAAAGCTCAGTTGAAAGATGGAAGTATTGTGGCCATCAAGAAATTGATACACGTTAGTGGGCAAGGGGATAGAGAATTCACAGCTGAAATGGAAACCATTGGAAAAATCAAGCACAGAAACCTTGTTCCTCTTCTGGGATACTGCAAAGTTGGAGAGGAAAGACTTTTGGTTTATGAGTACATGAAATATGGAAGTCTAGAAGATGTCCTGCACCATCCGAAGAAAGCTGAGATCAAGATGAATTGttatggtgtggttttgctcgagTTGCTGACGGGTAAAATGCCGACGGGCTCGTCTGATTTTGGTGATAACAATCTTGTTGGATGGGTGAAACAACATGCCAAACTTAAAATAATTGATGTTTTTGATCCAGAGCTTATGAAAGAAGACCCCAATTTGGAGATTGAGCTTTTGCAGCACTTACAGGTAGCTTGTGCTTGTTTGGATGATAGACCTTGGCGGAGACCTACAATGATTCAAGTCATGGCAATGTTCAAGCAAATACAAGCAGGTTCAGGGATGGATTCTCAGTCTACTATAGCCACAGAAGATGAAGGTTTCAATGCCATTGAAATGGTTGAAATGAGCATTAAAGAAGTCCCTGAATTAATCAAGCATTAG 3303 0.4148 MKPLYITTTTTSLFLLLSLFLLHLSPSHSSSQKDPTTSQLINFKETLPNPSLLHDWLPNQNPCSFTGITCNQTTLTSIDLTSIPLNTNLTVITTYLLTLDHLQILTLKSTNLTSSPISLSHFFKCSSSLTTIDLSLNTFSGPFSQFTFLSSCSALQSLNLSNNLLEFDSPKWRLSSTLQALDLSYNKFSGPNFFPWIFNHELQLLSLRGNKITGETDFSGYTKLRYLDISSNNFSVSIPSFGDCSSLQHLDLSANKYFGDITGTLSPCQNLLHLNLSGNQFTGPVPSLPSGSLQFLYLAANHFAGKIPARLASLCSTLVELDLSSNNLTGPIPGEFGACSLLKSFDISSNKFAGELPMEVLTEMKNLKDLAVAFNHFVGPLPVSLSKLTGLESLDLSSNNFTGTIPRWLCEEESGNNLKELYLQNNGFTGFIPPTLGNCSNLVALDLSFNFLTGTIPPSLGSLSKLRDLIMWLNQLHGEIPQELQNMESLENLILDFNELSGSIPSGLMKCTKLNWISLSNNRLSGEIPPWIGKLNNLAILKLSNNSFSGKIPPELGDCPSLIWLDLNTNNLTGPIPPELFKQSGKIAVNFISGKTYVYIKNDGSKECHGAGNLLEFAGISQQQLNRISTRNPCNFTRVYGGKLQPTFNHNGSMIFLDISHNYLSGTIPLEIGEMYYLYILNLGHNNISGNIPQELGKMKNLNILDLSYNLLEGQIPQPLTGLSLLTEIDLSNNYLSGLIPEYGQFDTFPAVKFMNNSGLCGVPLPPCEAYGGGAGESLQRQKSHRRQASLAGSVAMGLLFALFCIVGLVIIAIETRKRRKKKEAAIDGFIDNSHSGNANVSWKLTTAREALSINLATFEKPLRKLTFADLLEATNGFHNDSLIGSGGFGDVYKAQLKDGSIVAIKKLIHVSGQGDREFTAEMETIGKIKHRNLVPLLGYCKVGEERLLVYEYMKYGSLEDVLHHPKKAEIKMNCYGVVLLELLTGKMPTGSSDFGDNNLVGWVKQHAKLKIIDVFDPELMKEDPNLEIELLQHLQVACACLDDRPWRRPTMIQVMAMFKQIQAGSGMDSQSTIATEDEGFNAIEMVEMSIKEVPELIKH 1100
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g02452 1100 Pfam Leucine Rich Repeat 391 410 IPR001611 GO:0005515
Car05g02452 1100 Pfam Leucine Rich Repeat 417 439 IPR001611 GO:0005515
Car05g02452 1100 Pfam Leucine Rich Repeat 441 463 IPR001611 GO:0005515
Car05g02452 1100 SUPERFAMILY Protein kinase-like (PK-like) 860 1062 IPR011009 -
Car05g02452 1100 SMART LRR_typ_2 268 295 IPR003591 -
Car05g02452 1100 SMART LRR_typ_2 535 559 IPR003591 -
Car05g02452 1100 SMART LRR_typ_2 723 746 IPR003591 -
Car05g02452 1100 SMART LRR_typ_2 388 412 IPR003591 -
Car05g02452 1100 SMART LRR_typ_2 560 583 IPR003591 -
Car05g02452 1100 SMART LRR_typ_2 99 122 IPR003591 -
Car05g02452 1100 SMART LRR_typ_2 487 511 IPR003591 -
Car05g02452 1100 Pfam Leucine rich repeat N-terminal domain 39 71 IPR013210 -
Car05g02452 1100 Pfam Brassinosteroid receptor island domain 585 649 IPR045381 -
Car05g02452 1100 Pfam Protein tyrosine and serine/threonine kinase 881 973 IPR001245 GO:0004672|GO:0006468
Car05g02452 1100 Gene3D - 590 650 - -
Car05g02452 1100 Coils Coil 473 493 - -
Car05g02452 1100 SUPERFAMILY L domain-like 45 376 - -
Car05g02452 1100 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 12 974 - -
Car05g02452 1100 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 975 1074 - -
Car05g02452 1100 Pfam Leucine Rich repeats (2 copies) 222 263 IPR025875 -
Car05g02452 1100 ProSitePatterns Protein kinases ATP-binding region signature. 884 907 IPR017441 GO:0005524
Car05g02452 1100 Gene3D Phosphorylase Kinase; domain 1 838 952 - -
Car05g02452 1100 ProSiteProfiles Protein kinase domain profile. 878 1100 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car05g02452 1100 SUPERFAMILY RNI-like 292 578 - -
Car05g02452 1100 Gene3D Ribonuclease Inhibitor 40 768 IPR032675 -
Car05g02452 1100 PANTHER SYSTEMIN RECEPTOR SR160 12 974 - -
Car05g02452 1100 PANTHER SYSTEMIN RECEPTOR SR160 975 1074 - -
Car05g02452 1100 Pfam Leucine rich repeat 678 736 IPR001611 GO:0005515
Car05g02452 1100 SUPERFAMILY L domain-like 646 765 - -
Car05g02452 1100 Gene3D Transferase(Phosphotransferase) domain 1 953 1064 - -
Car05g02452 1100 Pfam Leucine Rich repeat 315 330 IPR001611 GO:0005515
Car05g02452 1100 Pfam Leucine Rich repeat 268 283 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g02452 Car-Chr5 69603020 69606595 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g02452 25 974 Receptor kinase-like Gene Family AT4G39400 62.863 0.0 1104
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-1 Car05g02452 PK_Tyr_Ser-Thr 1.2e-15 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g02452 K13415 - gmx:100799772 1452.57