Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g02448 ATGGACATGATGGATTTTGGAAACCCTAATCCTAACCCTTCCTATCAAAGTTTTTCTGCTCCTCTTCCCTCTTCTGATTTCATTTTATCTGATTATCTGGTGCTTGATGATGTTGTTGATCATCATCAAGAGTCTTGGTCACAAAGTACAGAAACTGAATCATCAGAAAAAGCAGCTTCCATTGATGTCATTCAAGGTTTTAGTGATGAAACCTCTATGAACAACAGTAACATGATATTAAAAAGGTGCAAAAGAGAGATAAAGGAAAATAATAGTAATAAAGTAGAAGAAGTGAAGGAAAGGGTAAcgtttagaacaagatcacaggttgagattatggatgatggatataagtggaggaagtacggaaagaaatcagtcaagaatagtccttatcaaagGAACTACTACAAGTGTTCAAGTGAAGGATGCAGTGTGAAGAAAAGGGTGGAAAGGGATAGCAAAGATTCAAGCTATGTGTTAACATCTTATGATGGTGTTCACAATCATGAGAGTCCTTCCACTTCTTACTACACTACCCCTCCAGTCTCAACCTTGCTCTATTCCAATGAATGGATACTAAACCATGCTTCTACAAACTCATCTTCTTACTAA 615 0.3122 MDMMDFGNPNPNPSYQSFSAPLPSSDFILSDYLVLDDVVDHHQESWSQSTETESSEKAASIDVIQGFSDETSMNNSNMILKRCKREIKENNSNKVEEVKERVTFRTRSQVEIMDDGYKWRKYGKKSVKNSPYQRNYYKCSSEGCSVKKRVERDSKDSSYVLTSYDGVHNHESPSTSYYTTPPVSTLLYSNEWILNHASTNSSSY 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g02448 204 ProSiteProfiles WRKY domain profile. 108 173 IPR003657 GO:0003700|GO:0006355|GO:0043565
Car05g02448 204 SUPERFAMILY WRKY DNA-binding domain 105 173 IPR036576 GO:0003700|GO:0006355|GO:0043565
Car05g02448 204 Pfam WRKY DNA -binding domain 114 171 IPR003657 GO:0003700|GO:0006355|GO:0043565
Car05g02448 204 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 19 178 IPR044810 GO:0003700
Car05g02448 204 Gene3D WRKY domain 98 174 IPR036576 GO:0003700|GO:0006355|GO:0043565
Car05g02448 204 PANTHER WRKY TRANSCRIPTION FACTOR 50-RELATED 19 178 - -
Car05g02448 204 SMART WRKY_cls 113 172 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g02448 Car-Chr5 69553118 69555301 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g02448 8 178 WRKY Transcription Factor Family AT5G64810 46.629 1.24e-42 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Car05g02448 WRKY 7.9e-22 CL0274
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car04g03171 04 59999297 60006336 Car05g02448 05 69553118 69555301 PCT