Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g02446 ATGGAGTTTACCGCAAAGCTTCATCATCCTGACCTCACCGCCTCATTTCTCTTATACACACGACGCCATGCTCTGCCACCTACCCTCACTCACACCTTTGCCACCACCAGACACAACAACATTAATACTAATTTTGTTTATCCCAATCGATTCTTCCACCCAAAAATATCAAATTCAACTTCATCTCGTTTACCTGCTGTAGCCGTCGACGACACTGCGTTAGCTGAAGACGACATTGAGTCGCTATTTTCCAAATCTTCCGTCGATGAACGAAAAAGCAACAAGCAATCGAAATCAAATAGCGGCGCTTCGAGTGTTTCATCTGGTGTTAAGTTGGAAAACATTCGCAAAACGTACAAAGGTGTTACCGTTTTGAAGGAGGTTAATTGGGAAGTGAAAAAGGGAGATAAAGTAGGTTTGGTTGGTGTAAACGGTGCAGGGAAAACAACTCAGATGAGGATTATTGCTGGTCTTGAAGAACCTGATTCTGGTAACGTGATCAAAGCTAAACCTAACATGAAAATTGCGTTTTTAAGCCAAGAATTCGAGGTGTCACCGAGTAGGACGGTTAGGGAAGAGTTTATGAGTGCTTTCAAAGAGGAAATGGAGGTTGCTGCTAAGTTGGACAAAGTGCAGAAGGCTCTTGAGGATTCTGTTAATGATTTGGAGTTGATGGGAAGGCTTTTGGATGAGTTTGATTTGCTTCAGAGACGAGCACAGTCTGTGAATTTGGATGTTGTTGATTCAAAGATAAGTAAGTTGATGCCTGACCTTGGTTTTGGTACCGAGGATTCTGATAGGTTGGTTGCATCTTTTAGTGGTGGATGGCAAATGAGGATGTGTCTTGGGAAGATTATACTTCAGGAACCGGATTTATTATTGTTAGACGAGCCCACAAATCACCTTGATCTTGACACTATTGAGTGGCTTGAAGACTATCTTAATAAGCAGGATGTACCGATGGTTATAATTTCCCATGACAGAGCTTTTCTCGATCAACTGTGTACGAAAATTGTGGAAACTGACATGGGTGTATCCAGGACATTTGAGGGAAATTATTCTGAGTATATACTTTCAAAGGCAACTTGGATTGAAACACAGTATGCTGCATGGGAGAAACAGCAGAAAGAAATTGAACAGACAAGAGAGTTGATAAGTAGGCTAGGTGCCGGAGCAAGTTCTGGCCGCGCTTCTACCGCTGAGAAGAAATTGGAAAGACTTCTAGGCGAGGAACTAGTAGAGAAGCCATTTGAGCGGAAACAAATGAAAATCAGGTTCCCTGAGCGTGGAAGGAGCGGAAGATCTGTCATAACAGTTAGTAACTTGGATTTTGGCTTTGAGGATAAAACACTTTTCAACAAGGCAAATCTTACAATTGAAAGGGGAGAAAAAGTTGCCATTCTTGGTCCAAATGGATGTGGCAAGAGTACTTTACTGAAATTGATTATGGGTTTAGAGAAGCCAAAGAGCGGTGAAGTTATACTTGGGGAGCATAATGTATTGACCAACTATTTTGAGCAAAATCAGGCTGAAGCACTTGATCTGGAAAAGACAGTGCTTGAGACAGTAGAGGAAGCTGCAGAGGACTGGAGGAGTGATGATATCAAAGGACTTCTTGGGCGTTGTAATTTTAAATCTGATATGCTTGACCGTAAAGTTTCTCTATTGAGTGGTGGTGAGAAGGCACGGCTGGCTTTTTGCAAATTTATGGTAAAACCGTCAACTGTGCTTGTTTTGGATGAACCAACCAATCACTTGGATATACCTTCTAAAGAAATGCTTGAGGAGGCAATAACGGAGTACCAGGGCACTGTTATTGCAGTATCTCATGATCGGTACTTTATAAAGCAGATAGTTAATAGAGTGATTGAAGTTAAAGATGCCACTTTACAGGATTATGCTGGGGATTACAATGTAAAGCTTGAACGTGAGGCAGAGCTTGAGGACAAAGCTCCTAAAGTGAAAGCCAAATCTAAGATGTCAAAGGCTGagaaagaagcaaggaagaagcaaaagcagcaagcctttcaagcagcaaAACAGAAGTCTAAAGGTGCAAAAAATTCAAAGAGATGGAATTGA 2082 0.4063 MEFTAKLHHPDLTASFLLYTRRHALPPTLTHTFATTRHNNINTNFVYPNRFFHPKISNSTSSRLPAVAVDDTALAEDDIESLFSKSSVDERKSNKQSKSNSGASSVSSGVKLENIRKTYKGVTVLKEVNWEVKKGDKVGLVGVNGAGKTTQMRIIAGLEEPDSGNVIKAKPNMKIAFLSQEFEVSPSRTVREEFMSAFKEEMEVAAKLDKVQKALEDSVNDLELMGRLLDEFDLLQRRAQSVNLDVVDSKISKLMPDLGFGTEDSDRLVASFSGGWQMRMCLGKIILQEPDLLLLDEPTNHLDLDTIEWLEDYLNKQDVPMVIISHDRAFLDQLCTKIVETDMGVSRTFEGNYSEYILSKATWIETQYAAWEKQQKEIEQTRELISRLGAGASSGRASTAEKKLERLLGEELVEKPFERKQMKIRFPERGRSGRSVITVSNLDFGFEDKTLFNKANLTIERGEKVAILGPNGCGKSTLLKLIMGLEKPKSGEVILGEHNVLTNYFEQNQAEALDLEKTVLETVEEAAEDWRSDDIKGLLGRCNFKSDMLDRKVSLLSGGEKARLAFCKFMVKPSTVLVLDEPTNHLDIPSKEMLEEAITEYQGTVIAVSHDRYFIKQIVNRVIEVKDATLQDYAGDYNVKLEREAELEDKAPKVKAKSKMSKAEKEARKKQKQQAFQAAKQKSKGAKNSKRWN 693
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g02446 693 PANTHER ATP-BINDING TRANSPORT PROTEIN-RELATED 60 683 - -
Car05g02446 693 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 111 353 IPR027417 -
Car05g02446 693 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 417 638 IPR027417 -
Car05g02446 693 CDD ABCF_EF-3 437 627 - -
Car05g02446 693 ProSitePatterns ABC transporters family signature. 272 286 IPR017871 GO:0005524
Car05g02446 693 Gene3D - 401 683 IPR027417 -
Car05g02446 693 Pfam ABC transporter 125 300 IPR003439 GO:0005524
Car05g02446 693 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 110 368 IPR003439 GO:0005524
Car05g02446 693 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 437 652 IPR003439 GO:0005524
Car05g02446 693 PANTHER ABC TRANSPORTER F FAMILY MEMBER 5 60 683 - -
Car05g02446 693 MobiDBLite consensus disorder prediction 85 107 - -
Car05g02446 693 CDD ABCF_EF-3 111 340 - -
Car05g02446 693 Gene3D - 107 391 IPR027417 -
Car05g02446 693 Coils Coil 653 682 - -
Car05g02446 693 Pfam ABC transporter 339 426 IPR032781 -
Car05g02446 693 MobiDBLite consensus disorder prediction 648 673 - -
Car05g02446 693 Pfam ABC transporter 453 584 IPR003439 GO:0005524
Car05g02446 693 MobiDBLite consensus disorder prediction 648 693 - -
Car05g02446 693 SMART AAA_5 134 349 IPR003593 -
Car05g02446 693 SMART AAA_5 461 629 IPR003593 -
Car05g02446 693 ProSitePatterns ABC transporters family signature. 556 570 IPR017871 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g02446 Car-Chr5 69538501 69544308 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g02446 434 627 Calmodulin-binding Proteins AT2G36910 25.806 1.31e-11 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g02446 - - gmx:100796907 1004.59