Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g02443 ATGGCACCCAAACAGAGAACCGCTAGGGTAAGCAGAAACCCCGATTTGATCAGGGGAATCGGAAAATACTCAAAATCTGCCATGTACCACAAGAGAGGTCTCTGGGCCATCAAGGCCAAACACGGCGGCGCTTTCCCTAAACATGATCCCAAACCTAAGCCTGAAGCTCCCGCTGAGAAGGCTCCTAAATTCTACCCCGCCGATGATGTCAAGAAGCCACTTCGCAACAAGCACAAACCTAAGCCTACTAAGCTCAGGTTCGTTACGGTCGTTCATTTCTATCCACACTCTTTTTTAGATATATTATATTCTCTTTATCTCTGGCCAGTTTTCATATTCTTCTTTCTCACCACTTCAGGTCCTTTTAAGATCAATGGAGTCCCATTGAGGCGTGTGAATCAGTCTTATGTTATCGGGACATCAACCAAAGTAGATGTTTCTTCAGTTAATGTTGATAAGTTTGACGATAAGTACTTCTCTAAGGAAGCTGAGAAAAAGAAAACCAAGGGAGAGGGCGAGTTCTTTGATTCAGAGAAAGAGGATAAAAAGGTGCTCCCCCAGGAAAAGAAAGACGATCAAAAGACTGTTGATTCCTCATTGTTGAAAGCCATCGAGACTGTTCCAGACTTGAAGACTTACCTAGGTGCCAGGTTTTCATTGAAGTCCGGTGTGAAGCCTCACGAGTTGGTCTTCTAG 696 0.444 MAPKQRTARVSRNPDLIRGIGKYSKSAMYHKRGLWAIKAKHGGAFPKHDPKPKPEAPAEKAPKFYPADDVKKPLRNKHKPKPTKLRFVTVVHFYPHSFLDILYSLYLWPVFIFFFLTTSGPFKINGVPLRRVNQSYVIGTSTKVDVSSVNVDKFDDKYFSKEAEKKKTKGEGEFFDSEKEDKKVLPQEKKDDQKTVDSSLLKAIETVPDLKTYLGARFSLKSGVKPHELVF 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g02443 231 PANTHER 60S RIBOSOMAL PROTEIN L6 1 231 - -
Car05g02443 231 MobiDBLite consensus disorder prediction 170 197 - -
Car05g02443 231 Pfam Ribosomal protein L6, N-terminal domain 3 60 IPR005568 GO:0003735|GO:0005840|GO:0006412
Car05g02443 231 PANTHER 60S RIBOSOMAL PROTEIN L6 1 231 IPR000915 GO:0003735|GO:0005840|GO:0006412
Car05g02443 231 Pfam Ribosomal protein L6e 124 231 IPR000915 GO:0003735|GO:0005840|GO:0006412
Car05g02443 231 CDD KOW_RPL6 119 231 IPR041997 -
Car05g02443 231 SUPERFAMILY Translation proteins SH3-like domain 116 171 IPR008991 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g02443 Car-Chr5 69514833 69516786 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g02443 1 231 Cytoplasmic Ribosomal Protein Gene Family AT1G74060 66.667 1.22e-96 280
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g02443 K02934 - cit:102608733 308.145