LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Car05g02443	ATGGCACCCAAACAGAGAACCGCTAGGGTAAGCAGAAACCCCGATTTGATCAGGGGAATCGGAAAATACTCAAAATCTGCCATGTACCACAAGAGAGGTCTCTGGGCCATCAAGGCCAAACACGGCGGCGCTTTCCCTAAACATGATCCCAAACCTAAGCCTGAAGCTCCCGCTGAGAAGGCTCCTAAATTCTACCCCGCCGATGATGTCAAGAAGCCACTTCGCAACAAGCACAAACCTAAGCCTACTAAGCTCAGGTTCGTTACGGTCGTTCATTTCTATCCACACTCTTTTTTAGATATATTATATTCTCTTTATCTCTGGCCAGTTTTCATATTCTTCTTTCTCACCACTTCAGGTCCTTTTAAGATCAATGGAGTCCCATTGAGGCGTGTGAATCAGTCTTATGTTATCGGGACATCAACCAAAGTAGATGTTTCTTCAGTTAATGTTGATAAGTTTGACGATAAGTACTTCTCTAAGGAAGCTGAGAAAAAGAAAACCAAGGGAGAGGGCGAGTTCTTTGATTCAGAGAAAGAGGATAAAAAGGTGCTCCCCCAGGAAAAGAAAGACGATCAAAAGACTGTTGATTCCTCATTGTTGAAAGCCATCGAGACTGTTCCAGACTTGAAGACTTACCTAGGTGCCAGGTTTTCATTGAAGTCCGGTGTGAAGCCTCACGAGTTGGTCTTCTAG	696	0.444	MAPKQRTARVSRNPDLIRGIGKYSKSAMYHKRGLWAIKAKHGGAFPKHDPKPKPEAPAEKAPKFYPADDVKKPLRNKHKPKPTKLRFVTVVHFYPHSFLDILYSLYLWPVFIFFFLTTSGPFKINGVPLRRVNQSYVIGTSTKVDVSSVNVDKFDDKYFSKEAEKKKTKGEGEFFDSEKEDKKVLPQEKKDDQKTVDSSLLKAIETVPDLKTYLGARFSLKSGVKPHELVF	231

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Car05g02443	231	PANTHER	60S RIBOSOMAL PROTEIN L6	1	231	-	-
	Car05g02443	231	MobiDBLite	consensus disorder prediction	170	197	-	-
	Car05g02443	231	Pfam	Ribosomal protein L6, N-terminal domain	3	60	IPR005568	GO:0003735\|GO:0005840\|GO:0006412
	Car05g02443	231	PANTHER	60S RIBOSOMAL PROTEIN L6	1	231	IPR000915	GO:0003735\|GO:0005840\|GO:0006412
	Car05g02443	231	Pfam	Ribosomal protein L6e	124	231	IPR000915	GO:0003735\|GO:0005840\|GO:0006412
	Car05g02443	231	CDD	KOW_RPL6	119	231	IPR041997	-
	Car05g02443	231	SUPERFAMILY	Translation proteins SH3-like domain	116	171	IPR008991	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Car05g02443	Car-Chr5	69514833	69516786	Dispersed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Car05g02443	1	231	Cytoplasmic Ribosomal Protein Gene Family	AT1G74060	66.667	1.22e-96	280

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Car05g02443	K02934		-	cit:102608733	308.145

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