Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g02428 ATGGGAAGTGTTAGTAACATTGGCTTCTTCTCTTCACCATCCATATTTTCAAAGCAGAGGAAACACAAATCTTTATGCAGTTTTATGATTTATCACAACAACGTCAACTACAAAGTTAGGAATATGAGCAGAATCTGTTGCAATAAACTATCAGAAAGTGGGATTGAAGAGATTCATACCACTAAAAGGGTATCTAAATCAAAGGATAGCGTGGAAGAGTACAATACAGCTATGAAGAGGATGATGAGGAACCCTTATGAGTATCATCACGATCTGGGTATGAATTATACAGTTATAACGGAGTATTTGATTGTGGGATCCCAACCACAGAAACCTGAAGATATAGATCATCTGAAGAAGGAAGAAGGTGTGGCATACATTCTAAACTTGCAACAAGATAAGGATGTAGAATATTGGGGAATAGACTTGCAATCAATAATAAAAAGGTGTCGTGAACTTGACATTAGGCACATGAGGAGACCGGCAGTAGACTTTGATCCAAACTCTTTGCAAAGTGCACTACCTAAAGCAGTTTCATCTTTGGAATGGGCAATTTCTGAGGGAAAAGGAAAAGTTTATGTGCATTGCACTGCAGGACTTGGAAGAGCTCCAGCAGTGGCAATTGCTTATTTGTTCTGGTTTTCTGAGATGAATCTAAATGCAGCGTATGATATGCTAACTTTAAAGAGACCTTGTGGACCGAATAAAAAAGCAATACGCGGTGCTACTTATGATTTAGCTAAGAACGACCCGTGGAAGGAGCCATTTGAGAGTCTTCCAGACCATGCTTTTGGGGATATAGCAGATTGGGAGAGGAACCTGATTCAAAACCGTGTTCGTGCTCTTCGCGGAACTTGA 858 0.3986 MGSVSNIGFFSSPSIFSKQRKHKSLCSFMIYHNNVNYKVRNMSRICCNKLSESGIEEIHTTKRVSKSKDSVEEYNTAMKRMMRNPYEYHHDLGMNYTVITEYLIVGSQPQKPEDIDHLKKEEGVAYILNLQQDKDVEYWGIDLQSIIKRCRELDIRHMRRPAVDFDPNSLQSALPKAVSSLEWAISEGKGKVYVHCTAGLGRAPAVAIAYLFWFSEMNLNAAYDMLTLKRPCGPNKKAIRGATYDLAKNDPWKEPFESLPDHAFGDIADWERNLIQNRVRALRGT 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g02428 285 Gene3D Protein tyrosine phosphatase superfamily 78 285 IPR029021 -
Car05g02428 285 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 172 231 IPR000387 GO:0016311|GO:0016791
Car05g02428 285 Pfam Dual specificity phosphatase, catalytic domain 116 235 IPR000340 GO:0008138|GO:0016311
Car05g02428 285 ProSiteProfiles Dual specificity protein phosphatase domain profile. 95 252 IPR020422 GO:0006470|GO:0008138
Car05g02428 285 SMART dsp_5 95 237 IPR020422 GO:0006470|GO:0008138
Car05g02428 285 CDD DSP_laforin-like 94 241 IPR045204 GO:0019203|GO:0046838
Car05g02428 285 PANTHER PHOSPHOGLUCAN PHOSPHATASE LSF2, CHLOROPLASTIC 16 285 - -
Car05g02428 285 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 92 237 IPR029021 -
Car05g02428 285 PANTHER DUAL SPECIFICITY PHOSPHATASE, SUBGROUP, CATALYTIC DOMAIN 16 285 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g02428 Car-Chr5 69386283 69389754 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g02428 40 285 Protein tyrosine phosphatase (PTP) family AT3G10940 74.494 4.36e-139 392
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g02428 - - gmx:100787079 456.062
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car05g02428 05 69386283 69389754 Car05g02428 05 69386283 69389754 ECH