Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g02410 ATGTCATCTGAAGACATCGGTCTCGGTCCAGATCAGAGAATCGAAAACGGCCTAACCTCTCCCAACGTCTTCCGAGATGACCATATGCGCTTCAACTGCAGCGGTGCTCCACAGCGACATGTCGGTGATCCTGGTCCTAAAACTCGAGAAGTCGGCGGATTCATCGATGAAAAGATGTTCACAGTCAATCGCGGTCATTTTTTCCCCACACATGGCACGGAGTTTCGCCGGAACGTTTTCGACAATCGCTCCGACCGCCGGGACCAGTCAGATGTACTGAACTATAGCGCGGACACTCCCAGTAGcgacgattccgacggagaagacgatgatgatgaagacgacgaTGGAGACACCGTAGTAGACAGACTCGTCAGTATTGGTGACGTGAGCAAGCGCAATTCAAATTCAATCATAGACGTTAACAATAACAATGGCGGTGGTGTTGCAAATGGAAAAGCTCAGCATCATTCCCCTTATGTTTCTGGTAGAGAGATATTGGGAAAGGACGGTAATATTGTACAGTTGGGGCATAACAATGCGAGTGGTACTACTGATGAAGATCATCAGCGAGAAAGATTGGGTAAAACTCAGAACTCTGTAACCGTTGCTGAAACTGACTGTGAGGAGTACTATTCGCACTATCTTCAAGGCACGGAAGGGTTGCCTTCTGTGCAGAAAGTTATGGTGGATGATAATGGTTGTGGGTTTAGTGGAAGAAAGGATGCCATGTATTTGAGCGAGTCAGGGGAGTCATTGAGGGCAATTCTTTCCGATCCTGTTACTGGAACTCTTATGGATGATGCAATGATATTACCTTGTGGACATTCATTTGGTGGAGGCGGAATACAGCATGTTATTAGAATGAAAGCTTGTTGTACTTGTTCTCAACCCACATCTGAGGAATCGATATCTCCAAATTTGTCACTTCGAGCCGCTGTGCAGGCATACCGACGGGAAGAGGAATCACAATTTTACCGGTCATCCAAAAGAAGAAAAGAAAGATTTGATCAGGGTGGTGTCGGAGAGTTGGCTGGTAATGAACCACCAAGGAATAGAGGTGTTCAATTTCCATTTGCTGTGACAGACCGGGTTATCATAAAGGTATGTGGTGAAGACATTGGACAATGCAGAAAGTGTAAAATTGCAGTATCGCTCCCTTGCTAA 1167 0.4439 MSSEDIGLGPDQRIENGLTSPNVFRDDHMRFNCSGAPQRHVGDPGPKTREVGGFIDEKMFTVNRGHFFPTHGTEFRRNVFDNRSDRRDQSDVLNYSADTPSSDDSDGEDDDDEDDDGDTVVDRLVSIGDVSKRNSNSIIDVNNNNGGGVANGKAQHHSPYVSGREILGKDGNIVQLGHNNASGTTDEDHQRERLGKTQNSVTVAETDCEEYYSHYLQGTEGLPSVQKVMVDDNGCGFSGRKDAMYLSESGESLRAILSDPVTGTLMDDAMILPCGHSFGGGGIQHVIRMKACCTCSQPTSEESISPNLSLRAAVQAYRREEESQFYRSSKRRKERFDQGGVGELAGNEPPRNRGVQFPFAVTDRVIIKVCGEDIGQCRKCKIAVSLPC 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g02410 388 MobiDBLite consensus disorder prediction 102 119 - -
Car05g02410 388 MobiDBLite consensus disorder prediction 1 25 - -
Car05g02410 388 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 62-RELATED 70 368 - -
Car05g02410 388 MobiDBLite consensus disorder prediction 135 156 - -
Car05g02410 388 MobiDBLite consensus disorder prediction 135 151 - -
Car05g02410 388 MobiDBLite consensus disorder prediction 324 339 - -
Car05g02410 388 ProSiteProfiles U-box domain profile. 252 324 IPR003613 GO:0004842|GO:0016567
Car05g02410 388 MobiDBLite consensus disorder prediction 324 353 - -
Car05g02410 388 Pfam U-box domain 258 322 IPR003613 GO:0004842|GO:0016567
Car05g02410 388 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 62 70 368 - -
Car05g02410 388 SUPERFAMILY RING/U-box 251 323 - -
Car05g02410 388 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 252 322 IPR013083 -
Car05g02410 388 MobiDBLite consensus disorder prediction 81 119 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g02410 Car-Chr5 69218510 69223482 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g02410 200 368 Plant U-box Gene Family AT5G05230 54.802 1.25e-49 169
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g02410 - - adu:107470194 494.197
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car05g02410 05 69218510 69223482 Car05g02410 05 69218510 69223482 ECH