Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g02409 ATGGAAGTTTTTCTTGTGTGCTTGTTTTCGCTGCTTCTGGTGAAAGTGAGTTCAGTGAACCCATCTCTAAACGATGACGTTTTGGGGTTGATTGTGTTCAAAGCAGATATACAAGATCCAAAGGGAAAATTAACATCTTGGAACGAAGACGATGAAAGTGCGTGTGGTGGTAGTTGGGTTGGTGTGAAATGCAACCCTAGATCCAACAGGGTTGTAGAGATTAACCTTAATGGGTTTTCTTTATCCGGAAGAATAGGTCGTGGTTTACAACGCTTGCAGTTTCTTCGTAGGCTTTATTTGGCGAACAATAATCTCACTGGGAACATAGCCCCTAATATTGCTATCATTGACAACCTTAGGGTTCTTGATTTGAGTAAAAATAATCTTTCAGGGGTTGTTCCTGATGATTTTTTTCGACAATGTGGGTCTATGAGAGTTGTTTCTTTGGCAGGGAACATGTTTTCTGGGAACATACCTTCTAGTTTAGGGTCGTGTTCAGCTATTGCTACTATTGACCTTTCTTTTAACCAGTTTTCGGGTTCTGTTCCTAAGGAAGTTTGGACTTTGAGTGGACTAAGGTCACTTGATTTGTCTGATAATTTGTTGGAAGGTGATATTCCTCAAGATGTTACGGCTTTGAAGAATTTGAGGAGTATTAACTTGGCGAGGAATAGCTTTTCCGGGAAGATTCCTAATGGGTTTGGAAGTTGTTTGCTTTTGAGGTCTATTGATTTTGGTGACAATTCTTTCACTGGTGGTTTACCTATTGATTTGAAAGGATTGGTGTTGTGTGGTTACTTTAGTTTGCGTGGAAATGCTTTTTCAGGAGATGTTCCTGAGTGGATTGGTGAGATGAAGGGTCTTCAGACATTGGATCTTTCTATGAATAGATTTTCTGGGTTGGTGCCGAACTCTTTAGGAAACCTTTGGTCATTGAAAAGATTGAATCTTTCTGCAAATGGTTTCACTGGTAACCTTCCCGAGTCTATGGCGAATTGCACGAATCTATTGGCCTTGGATGTTAGCCAGAATTTGATGTCTGGTGATCTTCCGTCGTGGATTTTCAGGTCAGATTTGGAGAAGGTTTTGGTGGCAGAAAACAGAATGAGTGGTAGCTTGAAAAACCCTTTGTATTCTTTTACTGAAGTTGCGGTTCAGAGTCTTCAAGTTTTGGATTTCTCTCACAATGCATTTTCTGGTGAAATCACTTCTGGTGTTTCGGGTTTAAGCAGCTTGAGGGTTTTGAATTTATCGTATAACTCTTTGAGTGGTCATATTCCGGCCACAATTGGCGATTTGAAAACGTGCTCTAGTCTTGATTTGAGTTATAATAAGCTAAACGGAAGCATACCATGGGAAATTTGTGGAGCTGGGTCCTTGAAAGAGCTTATTTTGGAAAATAACTTCCTTGTTGGGGAAATTCCAACCTCAATTGAGAACTGTTCTGCATTAACAACTTTGATTCTGTCGAAGAACAGACTGAGTGGGTCGATACCTGCAACAGTTGCAAAACTATCCAACCTGCAAACTGTGGACTTATCATTCAACAACCTTATTGGAATCCTTCCGAAGCAACTGGCCAACCTTCCCAATCTGCTGACCTTCAATTTATCTCACAACAACCTTCGAGGTGAACTGCCTGCTGGTGGTTTTTTCAACACCATTTCGCCTTCTTCCGTTTCTGGAAATCCATTTCTTTGTGGCTCTGCTGTGAACAAAAAATGCCCTACTAAACTCCCAAAGCCTATTGTTCTGAATCCCAACATTACTACTGACCCTGACCAGAGTTCACTTTCACCAACGATGGGTCGCAAGAGAAATATCCTCAGCATTTCAGCACTCATTGCTATTGGTGCAGCTGCTGTCATTGTAATTGGGGTCATTAGCATCACTGTTCTCAACCTCCGGGTTCGGTCCACCACATCTCGATCTCCAGTCGCCCTTGCTTTTTCTGCAGGGGATGAGTTCAGCCGTTCGCCAACAACAGATGCCAATTCTGGCAAGCTTGTCATGTTTTCAGGTGAGCCTGATTTCAGCTCTGGAGCTCATGCTTTGCTTAACAAGGATTGTGAGCTTGGGCGTGGAGGATTCGGGGCAGTGTATCAAACAGTTCTTGGAGACGGGCGTTCAGTTGCTATAAAGAAGCTCACCGTGTCAAGCCTTGTGAAGTCTCAAGAAGATTTTGAGAGGGAAGTGAAGAAATTAGGAAAAGTCAGACACCAAAATCTCGTCGAACTCGAAGGCTATTATTGGACTTCATCGCTCCAACTTCTCATATACGAGTTTGTCTCCCGTGGCAGTTTATATAAGCATCTCCACGAAGGGTCTGGCGAAAACTTCCTTTCTTGGAACGAAAGATTCAACGTCATTCTCGGGACAGCAAAGGCTTTAGCTCACTTGCACCACTCTAACATTATTCACTACAACATTAAGTCAACCAACGTCCTTATTGATAGCTACGGCGAACCTAAAGTAGGGGATTTTGGCCTAGCAAGGCTGCTACCAATGCTTGATCGCTACGTCTTGAGCAGCAAAATTCAGAGCGCACTCGGCTACATGGCACCTGAGTTTGCCTGCAAAACAGTGAAAATAACCGAGAAATGTGACGTGTATGGGTTTGGAGTTCTGGTTTTGGAGATAGTGACAGGGAAGAGGCCTGTAGAGTATATGGAAGATGATGTTGTGGTACTTTGTGACATGGTTAGAGGAGCATTGGATGAAGGAAGGGTAGAAGAATGTATTGATGAGAGGCTTCAAGGTAAATTCCCGGTAGAAGAAGTGATTCCTGTGATTAAGCTTGGTTTGGTATGTACTTCACAAGTACCATCTAACAGGCCAGACATGGGAGAGGTAGTTACCATATTGGAGCTAATTAGATGCCCCTCTGAAGGACAAGAAGAGTTGttgaattga 2913 0.4267 MEVFLVCLFSLLLVKVSSVNPSLNDDVLGLIVFKADIQDPKGKLTSWNEDDESACGGSWVGVKCNPRSNRVVEINLNGFSLSGRIGRGLQRLQFLRRLYLANNNLTGNIAPNIAIIDNLRVLDLSKNNLSGVVPDDFFRQCGSMRVVSLAGNMFSGNIPSSLGSCSAIATIDLSFNQFSGSVPKEVWTLSGLRSLDLSDNLLEGDIPQDVTALKNLRSINLARNSFSGKIPNGFGSCLLLRSIDFGDNSFTGGLPIDLKGLVLCGYFSLRGNAFSGDVPEWIGEMKGLQTLDLSMNRFSGLVPNSLGNLWSLKRLNLSANGFTGNLPESMANCTNLLALDVSQNLMSGDLPSWIFRSDLEKVLVAENRMSGSLKNPLYSFTEVAVQSLQVLDFSHNAFSGEITSGVSGLSSLRVLNLSYNSLSGHIPATIGDLKTCSSLDLSYNKLNGSIPWEICGAGSLKELILENNFLVGEIPTSIENCSALTTLILSKNRLSGSIPATVAKLSNLQTVDLSFNNLIGILPKQLANLPNLLTFNLSHNNLRGELPAGGFFNTISPSSVSGNPFLCGSAVNKKCPTKLPKPIVLNPNITTDPDQSSLSPTMGRKRNILSISALIAIGAAAVIVIGVISITVLNLRVRSTTSRSPVALAFSAGDEFSRSPTTDANSGKLVMFSGEPDFSSGAHALLNKDCELGRGGFGAVYQTVLGDGRSVAIKKLTVSSLVKSQEDFEREVKKLGKVRHQNLVELEGYYWTSSLQLLIYEFVSRGSLYKHLHEGSGENFLSWNERFNVILGTAKALAHLHHSNIIHYNIKSTNVLIDSYGEPKVGDFGLARLLPMLDRYVLSSKIQSALGYMAPEFACKTVKITEKCDVYGFGVLVLEIVTGKRPVEYMEDDVVVLCDMVRGALDEGRVEECIDERLQGKFPVEEVIPVIKLGLVCTSQVPSNRPDMGEVVTILELIRCPSEGQEELLN 970
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g02409 970 SUPERFAMILY L domain-like 267 559 - -
Car05g02409 970 Pfam Leucine rich repeat 483 542 IPR001611 GO:0005515
Car05g02409 970 Pfam Leucine rich repeat 268 321 IPR001611 GO:0005515
Car05g02409 970 Pfam Leucine rich repeat 387 446 IPR001611 GO:0005515
Car05g02409 970 Gene3D Ribonuclease Inhibitor 185 281 IPR032675 -
Car05g02409 970 Gene3D Ribonuclease Inhibitor 288 578 IPR032675 -
Car05g02409 970 SMART LRR_typ_2 285 308 IPR003591 -
Car05g02409 970 SMART LRR_typ_2 409 433 IPR003591 -
Car05g02409 970 SMART LRR_typ_2 189 213 IPR003591 -
Car05g02409 970 SMART LRR_typ_2 529 553 IPR003591 -
Car05g02409 970 SMART LRR_typ_2 505 528 IPR003591 -
Car05g02409 970 SMART LRR_typ_2 116 139 IPR003591 -
Car05g02409 970 CDD STKc_IRAK 692 958 - -
Car05g02409 970 Gene3D Transferase(Phosphotransferase) domain 1 763 967 - -
Car05g02409 970 Gene3D Ribonuclease Inhibitor 24 184 IPR032675 -
Car05g02409 970 ProSiteProfiles Protein kinase domain profile. 686 958 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car05g02409 970 Pfam Leucine Rich Repeat 215 237 IPR001611 GO:0005515
Car05g02409 970 Pfam Leucine Rich Repeat 459 481 IPR001611 GO:0005515
Car05g02409 970 Pfam Leucine Rich Repeat 118 137 IPR001611 GO:0005515
Car05g02409 970 Pfam Protein tyrosine and serine/threonine kinase 688 953 IPR001245 GO:0004672|GO:0006468
Car05g02409 970 PRINTS Leucine-rich repeat signature 119 132 - -
Car05g02409 970 PRINTS Leucine-rich repeat signature 409 422 - -
Car05g02409 970 SUPERFAMILY Protein kinase-like (PK-like) 689 958 IPR011009 -
Car05g02409 970 Gene3D Phosphorylase Kinase; domain 1 680 762 - -
Car05g02409 970 ProSiteProfiles Leucine-rich repeat profile. 118 139 IPR001611 GO:0005515
Car05g02409 970 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC2 4 967 - -
Car05g02409 970 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 4 967 - -
Car05g02409 970 ProSitePatterns Protein kinases ATP-binding region signature. 692 715 IPR017441 GO:0005524
Car05g02409 970 SUPERFAMILY L domain-like 43 369 - -
Car05g02409 970 Pfam Leucine rich repeat N-terminal domain 24 65 IPR013210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g02409 Car-Chr5 69206866 69211393 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g02409 3 968 Receptor kinase-like Gene Family AT3G56370 66.530 0.0 1247
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-1 Car05g02409 PK_Tyr_Ser-Thr 2.8e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g02409 - - mtr:MTR_3g093930 1639.78
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car05g02409 05 69206866 69211393 Car05g02409 05 69206866 69211393 ECH