Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g02405 ATGAATGTTATTTTCCCTGCTAAGAGGAAGCTACTAGTAAAAGAGCTTCTTCAAGGTAAAGAGTATGCTACACAGTTAAAGTTTCTGCTTAAGAACCCTATTGCCTCTCATGGATCTCCCTCGGTTAAAGAATTGATGACCAATGTGCTCAGATCTTTCTCCCACACTNNNNNNNNNNNNNNTCTTTCTGTCATTAATTCTTCTCAACCTTCTAGCTCTGCTGTCAATTATTCAGGGGAAGATTTCAGGTCTGAAGATTCAAGTGAGAGTAGGAAGAGATTGTTACCTACCACCACAAAGGATCGAAGAGGTTCCTATAAAAGAAGAAAGAGTGAAGAGACACGAAACATAGTCTCTCAAACCACTGATGACATTCATTCATGGAGAAAGTACGGACAGAAGGAAATCCTCAATTCTCAATTCCCAAGGAGTTACTATAGGTGCACACGAAAACATGATCAAGGTTGCAAAGCAACAAAACAAGTACAACGTATAGAAGAGAATCCAGATATGTACCAAATTACATACATTGGATTTCACACATGCAAATCCACTTTACAAACTCCACAAATGGTCACATTTTCTGATACTAATAATAATTGGGATTCATTTCTTGTGAATTTTCATCATCATTCAAAGGTTCTAAATTATGATCAACATGATGATCCCCTTATAAGTACCTCACAAATTAGGCCAAATGTGAAACAAGAATATCTCAACGATGAAAGGAGTGAACTTACTGAAGATTTGTTGGATCCTAATTTGTGGTGTGATTTAAAGGATTTTGAACTGTCCAAGCCTGCCATTAATTTAAGCTTTAATACTGTTGTTTCTGATACTGTGTATTCATCTACTGAATCTCAAAATCTGGAAATTGATTTTGGGGTGTTTTCTTCTGATTTCAGCAATGATTTGATATATTTTGATGAAAGTCATTTGATTTAA 945 0.3524 MNVIFPAKRKLLVKELLQGKEYATQLKFLLKNPIASHGSPSVKELMTNVLRSFSHTXXXXXLSVINSSQPSSSAVNYSGEDFRSEDSSESRKRLLPTTTKDRRGSYKRRKSEETRNIVSQTTDDIHSWRKYGQKEILNSQFPRSYYRCTRKHDQGCKATKQVQRIEENPDMYQITYIGFHTCKSTLQTPQMVTFSDTNNNWDSFLVNFHHHSKVLNYDQHDDPLISTSQIRPNVKQEYLNDERSELTEDLLDPNLWCDLKDFELSKPAINLSFNTVVSDTVYSSTESQNLEIDFGVFSSDFSNDLIYFDESHLI 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g02405 314 ProSiteProfiles WRKY domain profile. 123 185 IPR003657 GO:0003700|GO:0006355|GO:0043565
Car05g02405 314 MobiDBLite consensus disorder prediction 68 115 - -
Car05g02405 314 MobiDBLite consensus disorder prediction 82 115 - -
Car05g02405 314 SUPERFAMILY WRKY DNA-binding domain 120 183 IPR036576 GO:0003700|GO:0006355|GO:0043565
Car05g02405 314 Pfam WRKY DNA -binding domain 123 183 IPR003657 GO:0003700|GO:0006355|GO:0043565
Car05g02405 314 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 8 297 IPR044810 GO:0003700
Car05g02405 314 SMART WRKY_cls 122 184 IPR003657 GO:0003700|GO:0006355|GO:0043565
Car05g02405 314 Gene3D WRKY domain 107 177 IPR036576 GO:0003700|GO:0006355|GO:0043565
Car05g02405 314 PANTHER WRKY DNA-BINDING TRANSCRIPTION FACTOR 70 8 297 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g02405 Car-Chr5 69171555 69173211 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g02405 7 228 WRKY Transcription Factor Family AT3G56400 40.086 3.45e-49 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Car05g02405 WRKY 3.7e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g02405 - - gmx:100170683 303.138
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car05g02405 05 69171555 69173211 Car05g02405 05 69171555 69173211 ECH