Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g02404 ATGGAAAAACAGAAGGAGAAAGAGTTGATCGAATTGTACGAAACCGCGAGGAAAGCGGCGGATGCATCCAGCACCGCCGATAGTCCGCACGAAGAAAGCCGATGCATTGATGCGCTCGAGCAGCTCAAGAAATTTCCCGTCAATTATAAAATTCTCGTTAATACCCAGGTGGGAAAGCATCTTAAAGTTCTCACAAAGCACCCGAAGCAGAAAATTCGGGCTTTTGCTGTTGACCTAATTGATATATGGAAATGCATAATTATCAAGGAAACAAGTAAAAACAAGAACGGAGACTCTGTTAATAAGGCCGAGTCAGCAAGTGGGGAGAGAGCTAAAACTGATAAAATGCAAAGGAGTTCGTCCGTGAAGGTTGAAAAAGGAGAAACTGTCAAGGTGGAGAAAGTTGGGAATGGTACATCAAACCTAAGCTCCGGAAATGGAAAGGTACAAGATATGGATGTCAAAATTGAGAAAACTGATCGTACCTCAAGCGTCAAGGTTGAAAAGATAGCCAAGGAGGAAATACCAGTTTCTGGGGCAAAGAAAATTTCATCCAGCTCTGCCACTCCTCCGAAGCTAAAGAGTATGATCAAATCTAATGATGCAATGCGAGACAAAATAAGGGAACTTCTCCATGATGCTTTATCTAAAGTCTCTGAAGAGGCAGATGAAGATGTCATGGATGAAGTTAATGCATGTGACCCTATTCGTGTTGCAGTGACAGTGGAATCTGTATTATTTGAAAAGTGGGGTGCTTCAAATGGAGCACAAAAGATCAAGTATAGGTCCTTAATGTTTAATCTCAAGGATCAGAAGAACCCAGATTTCCGGAGAAAAGTTTTACTCGGTATTATTGAACCACAACGTCTGCTCAACATGAGCTCAACAGAAATGGCTAGTGAGCAAAGGAAGCAGGAGATTGAGAAAATCAAGGAGAAGGCTTTGTTTGACTGTGAGCGTGGAGGTCAGCCCAAAGCTACAactgatcagtttaagtgtggtcggtgtggtcaaaggaaaaccacctattaccaaatgcagactcgcagtgctgatgaacctatgacaacttatgtcacttgtgttaactgcaacaaccgttggaagttctgTTAG 1116 0.3737 MEKQKEKELIELYETARKAADASSTADSPHEESRCIDALEQLKKFPVNYKILVNTQVGKHLKVLTKHPKQKIRAFAVDLIDIWKCIIIKETSKNKNGDSVNKAESASGERAKTDKMQRSSSVKVEKGETVKVEKVGNGTSNLSSGNGKVQDMDVKIEKTDRTSSVKVEKIAKEEIPVSGAKKISSSSATPPKLKSMIKSNDAMRDKIRELLHDALSKVSEEADEDVMDEVNACDPIRVAVTVESVLFEKWGASNGAQKIKYRSLMFNLKDQKNPDFRRKVLLGIIEPQRLLNMSSTEMASEQRKQEIEKIKEKALFDCERGGQPKATTDQFKCGRCGQRKTTYYQMQTRSADEPMTTYVTCVNCNNRWKFC 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g02404 371 MobiDBLite consensus disorder prediction 95 125 - -
Car05g02404 371 ProSiteProfiles TFIIS N-terminal domain profile. 14 90 IPR017923 -
Car05g02404 371 SUPERFAMILY Elongation factor TFIIS domain 2 188 301 IPR036575 GO:0006351
Car05g02404 371 Gene3D - 181 299 IPR036575 GO:0006351
Car05g02404 371 SMART TFS2_5 12 89 IPR003617 GO:0005634
Car05g02404 371 TIGRFAM TFSII: transcription elongation factor S-II 15 371 IPR006289 GO:0003676|GO:0005634|GO:0006368
Car05g02404 371 Pfam Transcription factor S-II (TFIIS) 331 369 IPR001222 GO:0003676|GO:0006351|GO:0008270
Car05g02404 371 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 1 103 IPR035441 -
Car05g02404 371 PANTHER TRANSCRIPTION ELONGATION FACTOR TFIIS 6 371 - -
Car05g02404 371 SMART mid_6 201 309 IPR003618 GO:0006351
Car05g02404 371 PANTHER TRANSCRIPTION FACTOR S-II ZINC FINGER DOMAIN-CONTAINING PROTEIN 6 371 - -
Car05g02404 371 ProSiteProfiles TFIIS central domain profile. 203 326 IPR003618 GO:0006351
Car05g02404 371 Pfam Transcription factor S-II (TFIIS), central domain 200 317 IPR003618 GO:0006351
Car05g02404 371 SMART Cys4_2 331 370 IPR001222 GO:0003676|GO:0006351|GO:0008270
Car05g02404 371 MobiDBLite consensus disorder prediction 105 125 - -
Car05g02404 371 ProSitePatterns Zinc finger TFIIS-type signature. 333 368 IPR001222 GO:0003676|GO:0006351|GO:0008270
Car05g02404 371 PIRSF TFIIS 4 371 IPR035100 -
Car05g02404 371 CDD Zn-ribbon_TFIIS 324 370 - -
Car05g02404 371 Gene3D - 300 371 - -
Car05g02404 371 ProSiteProfiles Zinc finger TFIIS-type profile. 329 369 IPR001222 GO:0003676|GO:0006351|GO:0008270
Car05g02404 371 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 28 99 IPR035441 -
Car05g02404 371 CDD TFIIS_I 13 87 - -
Car05g02404 371 SUPERFAMILY Zinc beta-ribbon 309 369 - -
Car05g02404 371 Pfam TFIIS helical bundle-like domain 38 84 IPR017923 -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Car05g02404 TFIIS_M 2.2e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g02404 K03145 - gmx:100811982 560.451
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car05g02404 05 69156919 69160684 Car05g02404 05 69156919 69160684 ECH