Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g02396 ATGATGTATGATTTAGgaccggcaaggtgttatcgacagattaaaaacaagccatacccgaagtcacgtttctgtcgtggtgttcctgatcctaagatcagaatttatgatgttggcatgaagaagaagggtgttgatgagtttcctttctgtgtccatcttgttagttgggagaaagaaaatgtatcaagtgaagcattggaagctgcTAGGATTGCCTGCAATAAATATATGTCCAAGTTTGCAGGAAAAGATACATTCCACTTGAGAGTCAGAGTCCATCCATTCCATGTTCTTAGGATCAACAAGATGCTTTCATGTGCTGGAGCTGATAGGCTTCAGACTGGAATGAGAGGTGCTTTTGGAAAACCACAGGGTACCTGTGCTAGAGTAGCTATTGGTCAGGTCCTTCTTTCTGTCCGTTGTAAGGACAGCAATAGCCATCATGCACAGGAGGCCCTCCGTCGTGCCAAGTTCAAGTTCCCTGGTCGTCAAAAGATCATTGTTAGCAGGAAGTGGGGTTTCACCAAGTTTAGCCGTACTGATTACCTCAAGTACAAGTCAGAGAACCGGATTGTTCCTGATGGTGTGAATGCAAAGCTTCTGGGATGCCATGGACCATTGGCAAACCGTCAGCCTGGAAGAGCTTTCTTGGATGCTAGTACTCCTTCTGCTTAG 678 0.3289 MMYDLGPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMSKFAGKDTFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRTDYLKYKSENRIVPDGVNAKLLGCHGPLANRQPGRAFLDASTPSA 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g02396 225 Pfam Ribosomal protein L16p/L10e 14 168 IPR016180 GO:0003735|GO:0005840|GO:0006412
Car05g02396 225 TIGRFAM uL16_euk_arch: ribosomal protein uL16 6 176 IPR001197 GO:0003735|GO:0005840|GO:0006412
Car05g02396 225 PANTHER 60S RIBOSOMAL PROTEIN L10-LIKE 7 221 - -
Car05g02396 225 PANTHER 60S RIBOSOMAL PROTEIN L10 7 221 IPR001197 GO:0003735|GO:0005840|GO:0006412
Car05g02396 225 CDD Ribosomal_L16_L10e 43 168 IPR016180 GO:0003735|GO:0005840|GO:0006412
Car05g02396 225 Gene3D Ribosomal protein L10e/L16 5 219 IPR036920 GO:0003735|GO:0005840|GO:0006412
Car05g02396 225 SUPERFAMILY Ribosomal protein L16p/L10e 7 175 IPR036920 GO:0003735|GO:0005840|GO:0006412
Car05g02396 225 ProSitePatterns Ribosomal protein L10e signature. 110 131 IPR018255 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g02396 Car-Chr5 69113896 69115212 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g02396 7 222 Cytoplasmic Ribosomal Protein Gene Family AT1G66580 86.111 5.58e-141 391
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g02396 K02866 - gmx:100305619 441.425