Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g02395 ATGTTTCCTAGTACGCGCCCTCGGTTTCGAGCTTCTTCCGATTCTGATTCTGAGGAAGTTTTGCTACGCAACGGCGTGGTGCGCGGGAACAGTTCATCTCCCCGGAATCGGGTTGGGGAATTGAACTGTAATGACGTGATCGGCGGTGGTCGTGGTATGTTGTTGTCGGAGGAGGCTCGCCGTGCCATCGCTGAGGAGAGAGTTCCACTCGCGTCTTTGGCCAgtgttgtcggtggtggtggtggtggtggtgATAGGGATAGCTCCTCCACTCGGCCGAGATTTGATTTTCAGCAGATTGCAAAATGGGTTGAACAAATTCTTCCATTCTCTCTTTTGTTGTTGGTTGTTTTGATTCGACAGCATTTACAAGGATTCTTTGTCACAATCAGTGTATCAGCTGTGATGTTCAAGTCAAATGAAATTGTTAAGAAACAAACTGCTCTAAAGGGAGATCAGAAAGTCTCTGCTCTTCTTGGTGTATCTTTTGTCTTCATGCTGTATGTGATATGCATTTACTGGTGGTATCGAAATGATGATCTTTTATACCCTCTGGCCTTGTTTCCGCCAAAAGCAACACCACCTTTCTGGCATACAATATTTATCATTTTGGTCAATGATATATTGGTGCGCCAAGCGGCAATGGCTTTCAAGTGTTTGTTGTTGATATACTACAAAAATAGCAGAGGCCATAATTTCCGTCAACAGGGTCAAATGTTAACTCTGGTCGAGTACACTCTGCTGTTGTATCGTGCTTTCTTGCCAACACCAGTTTGGTACCAATTTTTCTTTAACAAGGACTATGGAAGTCTCTTCTCATCGCTGATCACAGGATTGTATCTAACTTTCAAGCTAACATCTGCAGTTGAGAAGGTCCAATGCTTCATTTGTGCCTTAAAAGCATTATCAAAAAAGGAAATTCATTATGGGGTTTATGCCACAACAGAACAGGTAAATGCTGCTGGTGATCTGTGTGCTATATGCCAGGGGAAGATGCATGATCCTATCCTGTTGTGTTGTAAACACATGTTCTGCGACGAGTGTGTATCCGAATGGTTTGAGAGAGAATGGACTTGCCCATTATGCAGGAAGTCGGTAAAACCGGCTGATCTGCGGACCTTCGGGGATGGATCAACGAGTTTGTTTTTTCAGTTATTTTGA 1161 0.4255 MFPSTRPRFRASSDSDSEEVLLRNGVVRGNSSSPRNRVGELNCNDVIGGGRGMLLSEEARRAIAEERVPLASLASVVGGGGGGGDRDSSSTRPRFDFQQIAKWVEQILPFSLLLLVVLIRQHLQGFFVTISVSAVMFKSNEIVKKQTALKGDQKVSALLGVSFVFMLYVICIYWWYRNDDLLYPLALFPPKATPPFWHTIFIILVNDILVRQAAMAFKCLLLIYYKNSRGHNFRQQGQMLTLVEYTLLLYRAFLPTPVWYQFFFNKDYGSLFSSLITGLYLTFKLTSAVEKVQCFICALKALSKKEIHYGVYATTEQVNAAGDLCAICQGKMHDPILLCCKHMFCDECVSEWFEREWTCPLCRKSVKPADLRTFGDGSTSLFFQLF 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g02395 386 SUPERFAMILY RING/U-box 323 372 - -
Car05g02395 386 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 30 386 - -
Car05g02395 386 Pfam Zinc finger, C3HC4 type (RING finger) 323 367 - -
Car05g02395 386 ProSitePatterns Zinc finger RING-type signature. 340 349 IPR017907 -
Car05g02395 386 ProSiteProfiles Zinc finger RING-type profile. 325 363 IPR001841 -
Car05g02395 386 CDD RING-HC_RNFT1_like 324 363 - -
Car05g02395 386 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 299 373 IPR013083 -
Car05g02395 386 SMART ring_2 325 362 IPR001841 -
Car05g02395 386 PANTHER UNCHARACTERIZED RING FINGER-CONTAINING PROTEIN 30 386 IPR044235 GO:0061630|GO:1904294
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g02395 Car-Chr5 69104090 69110071 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g02395 8 386 C3H Transcription Factor Family AT5G01960 62.597 4.02e-178 500
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g02395 - K22379 gmx:100816630 564.688