Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g02389 ATGGACATTCTGAAAGCTGCGGTTCCAAACAGTCTAAGAAAAGTTATCGGAAACAGCACCTTAGATACTCTTCCCGACACATGTTCTTCTCTTCACAATTTCTTTCTTAAATTCCAACCATTTTGCGAGATTGTGACTCAACTTTCGGACTCAAGCTATGGTCTATGTGGCAAGAACAAGGACGACGCGTTGAAATACAAACACCTTGGTAATCAATGCTTCGTCGAAGCTGATTATGTCAAGGCTTTGGATTATTATACTCAGGCACTGCGCAAGGCTCCTAATGACGGTGCCATAGAAAATAATCTGTTCGCAACATTGTATGCCAATCGAGCTACTGTATTGTATAAAATGAGTCTTTTCATAGAATGTTTGCGAGACTGCAATCGAGCTCTTCAGATATGTCCAAGCTATGCAAAGGCATGGTATAGGAGAGGAAAGGCAAATGTTTCATTGGGAAATTATAAAGATGCGATCTGTGACTTAAATGTAGCTAAGATTGTTGAAACAGCAACAGGTGGGAAGAGACAAATAGAAAGTGAGCTGAAAATTATTTTAGACCAATCCAAGAGCACAAATACAGTAGAAGAGCCGCAACATAAGGAGAACAACTTGAATACAGTGGGTGAGGTGCCCCACATAAAGCTACAAAGTATCTCCATGCCTGATAAAGGAAGAGGCATGGTGTCGTCGTGTGATGTTTCACCAGGTTCTTTGGTTCATGCCGAAGAACCTTATGCTACAATAATATTAAAGCAATGCCGGGAAACTCATTGCCATTATTGCTTGAATGACCTACCTGCTGATAGAGTTCCTTGTATATCATGTTCGATACCATGGTATTGCTCCCGCCAATGCCAGATAAGGGCAAGTGGGGAAATGTACTTGATTTCCGCAGAAGCTAGTTACATTCTTAAAAACTTACCCGGTGTTCTTGGAGAATATGCTGCTGAAGTTGTTGAATGCAGTTATCGTGAATTAAAGGTTGATGATGTTACTGAACATCAACATGAATGTAATGGGGTACATTGGCCTGCTGTACTGCCGCCTGAGATAGTTTTGGCTGGCAGAATTCTAGCAAAGTTTTTTTCAAAGAGCTCATCTGATGGTATCACAAGTTTTGTGGAAAATCTGGAGCTTTCTCATTGTTACGAACATATGCCATTTGAAAGTAAATTGGATTCACATATATATGCCATTGTACTGTTATACTGTCTTAAATTCTCCAATGAGTTTAAATTCTCCTATGAGCGTATGTCTTCCATCAACGGAATCTCCATATCACAGGTTGTCATAGTTATTTCTCAGATTAAAGTGAATTGTATGACTGTTGTTCGTTTAAAATCAGTAGACACACTTGGACTATCAGATCAGTCTGGAGGATTTCCAATTTATTCCAGTGCACATTTAACCAATAAAGTGGAACAGGTCAGAGTGGGTAAAGCTATTTATAAAGCTGGCAGTTTATTCAACCATTCTTGCAAACCAAATGTTCATGCATATTTTCTTTCACGCACACTCTATTTACGAACAACAAATGTTATAGCAGCTGGGTGTCAGCTGGAATTGTCTTATGGTCCACAGGTTGGGTTGTGGGATTGTAAAGATCGCCGGAATTTTCTCAAAGATGAATATGCATTTCATTGTCAATGTACTGGTTGTTCAGAAGTCAATCTATCCGATATTGTCCTCAATGCTTTTCATTGCGTCGATCCAAATTGTTCTGGTGCAGTGTTGGAAAGCAGAGTACTTGAGTGTGAAAAGCAGAAGATTGAACACTTCCTTATTTCTGACAAAGTTAACAAGAATGATGATATCTATGAAGTATGTCTTCACGTGTTTAACCAAAATGACGCCACTATTCATATTCAACCTGGACTCTGTTTGAAATGTGGTTCTTACTGTGATCTGGAGTCTTCACGTGCCACAGTTGATAAAGCCTTAATATGCATAAAAAGGCTGCAGGATGCAATACTTTCAAAAGAAATTTCAAATACGTGTACGTCAGATGCTTTGAGATCTCTTCATTTGCTGAAATCAAATTTGCATGCGTACAATAAGCTTATTGCAGAGGCAGAAGACAACCTTGCCCAAGCTTTCTGTATAGTGGGAAAATTACAATTATCTGTGGATCATTGTAAAGCATCTATTCAGATTCTGGAGAAGCTATATGATCCTGATGATATTGTTATTGCTTATGAACTTGTGAAGCTTTCATCTGTCCAACTTTCCTTGGACGACGATAGTGCTGTAGACAGCATTAGTCGAATAGGTGGTATCTTCTCACGTTATTATGGACTTCATGCAGACTTGGAGAATAAGGAAGAACTCCATACTAATCCTGAAATGGAAATGTTCCTGGGATGA 2367 0.3912 MDILKAAVPNSLRKVIGNSTLDTLPDTCSSLHNFFLKFQPFCEIVTQLSDSSYGLCGKNKDDALKYKHLGNQCFVEADYVKALDYYTQALRKAPNDGAIENNLFATLYANRATVLYKMSLFIECLRDCNRALQICPSYAKAWYRRGKANVSLGNYKDAICDLNVAKIVETATGGKRQIESELKIILDQSKSTNTVEEPQHKENNLNTVGEVPHIKLQSISMPDKGRGMVSSCDVSPGSLVHAEEPYATIILKQCRETHCHYCLNDLPADRVPCISCSIPWYCSRQCQIRASGEMYLISAEASYILKNLPGVLGEYAAEVVECSYRELKVDDVTEHQHECNGVHWPAVLPPEIVLAGRILAKFFSKSSSDGITSFVENLELSHCYEHMPFESKLDSHIYAIVLLYCLKFSNEFKFSYERMSSINGISISQVVIVISQIKVNCMTVVRLKSVDTLGLSDQSGGFPIYSSAHLTNKVEQVRVGKAIYKAGSLFNHSCKPNVHAYFLSRTLYLRTTNVIAAGCQLELSYGPQVGLWDCKDRRNFLKDEYAFHCQCTGCSEVNLSDIVLNAFHCVDPNCSGAVLESRVLECEKQKIEHFLISDKVNKNDDIYEVCLHVFNQNDATIHIQPGLCLKCGSYCDLESSRATVDKALICIKRLQDAILSKEISNTCTSDALRSLHLLKSNLHAYNKLIAEAEDNLAQAFCIVGKLQLSVDHCKASIQILEKLYDPDDIVIAYELVKLSSVQLSLDDDSAVDSISRIGGIFSRYYGLHADLENKEELHTNPEMEMFLG 788
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g02389 788 SMART tpr_5 139 172 IPR019734 GO:0005515
Car05g02389 788 SMART tpr_5 63 96 IPR019734 GO:0005515
Car05g02389 788 SMART tpr_5 690 723 IPR019734 GO:0005515
Car05g02389 788 SMART tpr_5 105 138 IPR019734 GO:0005515
Car05g02389 788 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN 1 770 - -
Car05g02389 788 Gene3D SET domain 407 525 IPR046341 -
Car05g02389 788 Gene3D Tetratricopeptide repeat domain 533 786 IPR011990 GO:0005515
Car05g02389 788 Coils Coil 675 695 - -
Car05g02389 788 ProSiteProfiles SET domain profile. 212 526 IPR001214 GO:0005515
Car05g02389 788 Gene3D Tetratricopeptide repeat domain 40 202 IPR011990 GO:0005515
Car05g02389 788 SUPERFAMILY TPR-like 58 165 IPR011990 GO:0005515
Car05g02389 788 Pfam SET domain 225 526 IPR001214 GO:0005515
Car05g02389 788 ProSiteProfiles TPR repeat profile. 63 96 IPR019734 GO:0005515
Car05g02389 788 SUPERFAMILY SET domain 211 556 IPR046341 -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Car05g02389 SET 4.6e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g02389 K24634 - gmx:100783548 1135.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car05g02389 05 69035057 69046305 Car05g02389 05 69035057 69046305 ECH