Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g02388 ATGGCACCCCCAAGCAGGCCCAAAAGGGTTGTGCAAATGGAGGATAATATTGAAGGGGAAGATGAGCATGATGAGATGAGGAAGAATGTGGTTAGAGCTTTGCCATTCTTTAAATTGTTGAGCTATGCTGACTTTGTGGATTGGATTCTTATGGGTTTGGGAACTTTAGGTTCAATAGTGCATGGCATGGCACTTCCTGTTGGCTATTTGTTGTTAGGAAAAGCTCTTAATGCTTTTGGAAACAATATTCATGACACTAATGCTATGGTTCATGCTCTTAAAAAGGTTGTTCCATTTGTGTGGTACATGGCCATCGCCACATTTCCTGCTGGGGTACTTGAGATTGGTTGTTGGATGTATGCAAGTGAAAGACAGTTATCACGCCTAAGATTAGCATATCTAAAAGCAGTCCTCAGCCAAGAGATAGGTGCTTTTGATACAGAATTAACAAGTGGAAAAGTCATTACTGGAATAAGCAAACACATGAGTGTCATACAAGATGCCACAGGTGAGAAGTTGGGTCACTTCACCTCAAGCTGTGCAACTTTCTTGGCTGGAATTGTGATTGCTGCTATATCATGTTGGGAAGTGGCACTTCTATGTTTAGTTGTTGTCCCCCTTATTCTTATAATTGGGGCAATTTACACTAAGAAAATGAACACCATTTCAACCACCAAATTGTATTATCATTCTGAAGCCACATCTATGATAGAGCAGACAATTTCACAAATAAAAACAGTATATGCTTTTGTTGGAGAAGGCTTGGCAGTCAAATCCTTCACAGAGAACATGGATAAACAGTATGTCATAAGCAAAGGGGAGGCACTTGTGAAGGGAGTTGGAACAGGGATGTTACAAACTGTGAGTTTTTGTTCTTGGTCTCTGATTATATGGGTCGGAGCTGTTGTCGTCAAATCCGGGAGAGCAAAGGGAGGAGATATAATAACTGCAGTAATGAGTATTCTTTTTGGTGCCATATCTATCACTTATGCAGCACCAGACATGCAAATATTCAATCAGGCAAAAGCTGCTGGATATGAGGTTTTCCAAGTGATCCAAAGAAAGCCACTAATAAATAATGAATCAAAAGGGAAGATTCCTACGAAGATTAAAGGTTACATTGAGCTCCGAGATGTTTACTTTTCATACCCGTCACGGCCAGAGAAATCTATCCTTCAAGGACTGTCATTGTCCATACCAGCAGGAAAGACAGTAGCTCTAGTTGGTAGCAGTGGCTGTGGAAAGAGCACTGTTATTTCCCTGATAACTAGGTTTTATGACCCCACTAAAGGAGAAATTCTTATTGACAGTCATAATATCAAGGATCTTGATCTGAAGTTCCTTCGGAGTAATATAGGGGCTGTTTACCAAGAACCATCTCTTTTTACGGGCACAATCAAGGATAACTTGAAACTCGGAAAAATGGATGCAAATGATGATGAGATTCGAAAGGCAGCAGTGATGTCCAATGCACTCTCTTTCATATCACAGCTTCCTAATCAGTACCTAACTGAGGTAGGACAAAGGGGAGTCCAAGTATCAGGAGGTCAGAAACAGAGAATTGCAATTGCAAGAGCCATTCTGAAAAATCCTCCAATTCTTTTGCTTGACGAGGCCACAAGTGCCCTTGACTCAGAGTCGGAAAAGCTGGTTCAAGAAGCCCTTGAAACAGCTATGCAGGGAAGGACTGTCATCTTGATTGCACACAGGCTCTCAACAGTTGTAAATGCAGATATGATTGCTGTGGTGGAGAATGGACAAATTGTAGAGACAGGAACACACCAGAGTTTGTTAGACACAAGCAAATTCTACAGTACGTTATTCAGCATGCAGAACCCTGAACCAGTTCCTGAACTAAGAACTACAACTTCCAAAAATAAAAGTGTCCGCCAAGAAGACAATACTGATGAAACTAGACCACTACCAGAGATACCGAGAGAGGTCCAAAGAAATCTTAAAGAGCACTCTGAACTTAAGGATCAGAACCAGACGAACATAAGAGAAGAAAGTATATTTTTCAGAATTTGGTTTGATTTTAAAAAGAAGGAGCTGGTGAAGATTGTGATTGGCTCGTTTGCTGCAGCTTTCTCTGGCATCTCAAAGCCGTTTTTTGGGTTCTACATCATCACCATTGGAGTAGCATACTTCAAAGAAGATGCAATACAAAAAGTTGGACTATTCTCAGCCATCTTCTCTGGAATAGGGTTGCTTTCATTATTTAGCCACACCTTCCAACATTATTTCTTTGGAATGGTTGGAGAAAAGGCAATGGCGAATTTCAGAAGTGCTTTGTATTCAGGTGTGATTCATAATGAAGTAGGCTGGTTTGACAAATCAGAGAACACTGTTGGTTCATTAACTTCACGCATTATCAGCGATACTTCCCTGGTCAAAATCATAATTGCCGATCGCATGTCCGTCATTGTGCAATGTGTATCCTCCATACTTATAGCAACAGTTGTTAGCATGGCTGTCAACTGGAGAATGGGTTTGGTAGCATGGGCTGTGATGCCTTGCCACTTCATAGGTGGTCTCATTCAAGCCAAGTCAGCCAAAGGATTTTCAGGTGACTACTCTGCTTCACATTCAGAGCTTGTTGCTCTTGCATCTGAGTCCACCACCAACATAAGGACTATTGCATCATTTTGTCATGAAGAACAAGTACTGAAGAAAGCCAAAATATTTTTGGACATTCCAAAGAAAAAGTACAGGAAAGAAAGTATCAAATATGGCATCATTCAAGGCTTCTCCCTTTGCTTGTGGAACATTGCACACGCTGTTGCTTTGTGGTACACTACAATTCTGGTTGACAGACGTCAAGCTACCTTTGAAAACGGAATAAGATCATACCAAATTTTTTCTCTCACAGTTCCTTCTATCACTGAATTATACACACTGATCCCAACTGTCATCACTGCCATCAATATACTAACCCCAGCATTCAAAACCCTTGACCGTAAAACTGAAATTGAACCAGATATACCAGATATACTGGATGATTCCCAAGCCGAGAGGATAAAAGGAACTGTCGAATTTGAAAATGTAAAATTCACTTACCCTTCGAGACCTGCAGTCACTGTTCTTGACGATTTCAGTTTACAAATTGAAGCTGGATCTAAGGTGGCTTTTGTAGGACCAAGTGGCGCTGGAAAATCATCTGTTTTGGGCCTTTTATTAAGATTTTATGATCCAGTGGTGGGAAAAGTATTAATTGATGGGAAAGACTTGAGGGAATATAATCTAAGATGGTTAAGGACACGGATAGGTCTGGTACAACAAGAGCCACTGCTTTTTAACTGCTCAATTAGAGATAATATTTGCTATGGCAACAGTGGAGCTTCAGAAAGTGAAATAGTGGAGGTTGCTAGAGAAGCTAATATACATGAATTTATAAGTAATCTACCAAATGGATATAACACTGTTGTTGGAGAGAAAGGTTGTCAGCTTTCAGGAGGACAAAAGCAAAGAATAGTCATTGCCAGAACCTTAATAAAGAAGCCAGCAATATTACTCCTTGATGAAGCAACAAGTGCTCTCGATGCTGAGTCCGAAAGAATTATAGTAAATGCTATTAAAGCAATGAATCTGAAGGAAGAGAGTGGTTTGTGTTCAAGAATCACCCAGATCACAGTAGCTCATAGACTTTCCACAGTCAGAAACTCGGATACCATATTCGTCATGGAAAAAGGTAAAATTGTAGAAACAGGCTCCCACTCAACCCTGATAGCAGTGGATGCAGGACTTTATTCAAGATTATTCAGTCTGCAGAGGTTTGAAGAAACCTCATAG 3789 0.4049 MAPPSRPKRVVQMEDNIEGEDEHDEMRKNVVRALPFFKLLSYADFVDWILMGLGTLGSIVHGMALPVGYLLLGKALNAFGNNIHDTNAMVHALKKVVPFVWYMAIATFPAGVLEIGCWMYASERQLSRLRLAYLKAVLSQEIGAFDTELTSGKVITGISKHMSVIQDATGEKLGHFTSSCATFLAGIVIAAISCWEVALLCLVVVPLILIIGAIYTKKMNTISTTKLYYHSEATSMIEQTISQIKTVYAFVGEGLAVKSFTENMDKQYVISKGEALVKGVGTGMLQTVSFCSWSLIIWVGAVVVKSGRAKGGDIITAVMSILFGAISITYAAPDMQIFNQAKAAGYEVFQVIQRKPLINNESKGKIPTKIKGYIELRDVYFSYPSRPEKSILQGLSLSIPAGKTVALVGSSGCGKSTVISLITRFYDPTKGEILIDSHNIKDLDLKFLRSNIGAVYQEPSLFTGTIKDNLKLGKMDANDDEIRKAAVMSNALSFISQLPNQYLTEVGQRGVQVSGGQKQRIAIARAILKNPPILLLDEATSALDSESEKLVQEALETAMQGRTVILIAHRLSTVVNADMIAVVENGQIVETGTHQSLLDTSKFYSTLFSMQNPEPVPELRTTTSKNKSVRQEDNTDETRPLPEIPREVQRNLKEHSELKDQNQTNIREESIFFRIWFDFKKKELVKIVIGSFAAAFSGISKPFFGFYIITIGVAYFKEDAIQKVGLFSAIFSGIGLLSLFSHTFQHYFFGMVGEKAMANFRSALYSGVIHNEVGWFDKSENTVGSLTSRIISDTSLVKIIIADRMSVIVQCVSSILIATVVSMAVNWRMGLVAWAVMPCHFIGGLIQAKSAKGFSGDYSASHSELVALASESTTNIRTIASFCHEEQVLKKAKIFLDIPKKKYRKESIKYGIIQGFSLCLWNIAHAVALWYTTILVDRRQATFENGIRSYQIFSLTVPSITELYTLIPTVITAINILTPAFKTLDRKTEIEPDIPDILDDSQAERIKGTVEFENVKFTYPSRPAVTVLDDFSLQIEAGSKVAFVGPSGAGKSSVLGLLLRFYDPVVGKVLIDGKDLREYNLRWLRTRIGLVQQEPLLFNCSIRDNICYGNSGASESEIVEVAREANIHEFISNLPNGYNTVVGEKGCQLSGGQKQRIVIARTLIKKPAILLLDEATSALDAESERIIVNAIKAMNLKEESGLCSRITQITVAHRLSTVRNSDTIFVMEKGKIVETGSHSTLIAVDAGLYSRLFSLQRFEETS 1262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g02388 1262 Pfam ABC transporter transmembrane region 688 951 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Car05g02388 1262 Pfam ABC transporter transmembrane region 52 325 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Car05g02388 1262 SUPERFAMILY ABC transporter transmembrane region 680 992 IPR036640 GO:0005524|GO:0016021
Car05g02388 1262 MobiDBLite consensus disorder prediction 625 647 - -
Car05g02388 1262 PANTHER ABC TRANSPORTER B FAMILY 22 1259 - -
Car05g02388 1262 SUPERFAMILY ABC transporter transmembrane region 38 356 IPR036640 GO:0005524|GO:0016021
Car05g02388 1262 CDD ABC_6TM_Pgp_ABCB1_D1_like 51 348 - -
Car05g02388 1262 MobiDBLite consensus disorder prediction 613 647 - -
Car05g02388 1262 Gene3D ABC transporter type 1, transmembrane domain 38 627 IPR036640 GO:0005524|GO:0016021
Car05g02388 1262 Gene3D ABC transporter type 1, transmembrane domain 647 993 IPR036640 GO:0005524|GO:0016021
Car05g02388 1262 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1010 1254 IPR003439 GO:0005524
Car05g02388 1262 Gene3D - 364 612 IPR027417 -
Car05g02388 1262 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 53 340 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Car05g02388 1262 Pfam ABC transporter 392 541 IPR003439 GO:0005524
Car05g02388 1262 Pfam ABC transporter 1028 1177 IPR003439 GO:0005524
Car05g02388 1262 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 374 610 IPR003439 GO:0005524
Car05g02388 1262 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1004 1256 IPR027417 -
Car05g02388 1262 SMART AAA_5 401 593 IPR003593 -
Car05g02388 1262 SMART AAA_5 1037 1231 IPR003593 -
Car05g02388 1262 ProSitePatterns ABC transporters family signature. 513 527 IPR017871 GO:0005524
Car05g02388 1262 Gene3D - 1000 1261 IPR027417 -
Car05g02388 1262 PANTHER BRACHYTIC2 22 1259 - -
Car05g02388 1262 CDD ABC_MTABC3_MDL1_MDL2 1010 1256 - -
Car05g02388 1262 CDD ABC_MTABC3_MDL1_MDL2 374 611 - -
Car05g02388 1262 ProSitePatterns ABC transporters family signature. 1149 1163 IPR017871 GO:0005524
Car05g02388 1262 CDD ABC_6TM_Pgp_ABCB1_D2_like 681 990 - -
Car05g02388 1262 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 365 611 IPR027417 -
Car05g02388 1262 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 688 972 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g02388 Car-Chr5 69023451 69030826 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g02388 2 1261 Calmodulin-binding Proteins AT2G36910 40.233 0.0 941
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g02388 K05658 - zju:107414909 1779.99