Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g02376 ATGGGTTCTATTGACTGTGGTCCATCGCTTGGAGATGATGGGATGGCGGTTTTGTCTCTGAATTCGCTTCCATTAGGGTTCCGATTCCGACCTACAGACGAGGAACTTATCGATTACTACCTAAGACAAAAGATCAACGGAAATGGTGATGAGGTTTGGGTTATCCGAGAGATTGATGTCTGCAAATGGGAACCATGGGACATGCCTGATTTGTCAGTGATAAGGAACAAGGATCCAGAGTGGTTCTTTTTCTGTCCACAGGATCGAAAGTATCCAAATGGACATAGATTGAACAGAGCAACAACTCATGGGTATTGGAAAGCAACAGGAAAGGATCGTAAAATCAAATCCGGAACCATCTTGATTGGAATGAAGAAGACTTTAGTTTTCTACAGTGGTCGTGCACCTAAAGGGAAGAGAACCAATTGGGTTATGCATGAGTATCGACCCACCCTTAAGGAGCTTGATGGTACCAACCCAGGACAGAATGCATATGTCCTCTGTCGATTATTTAAGAAAAATGACGAGAGTCTTGAAGTTTCAAACTGTGGTGAAGTGGAGCAGACTACTTCAGCTCCCATGGCTGCCAATTACTCTCCAGAAGAAATACAGTCTGATGCAGCTCCTATTGCAGTATCCACATCACAGGTCACAGAAGATGACAAGCACCAGAATGTTATCCCTGAGATCTCTGAGGAAACAATATCCAATGTTATAGCCTCGGTTGATTGCCATAGTGATGGATATGATGCTCATGATATCCAAAATAAACTTGCAGAACTAGCTGCACAGGAGGATCAGATGAACTTTGACATATATTATAACCCAAAAGAAGGTCTATTAGATGACAGATTATTCTCCCCAGCTCTGGTGCATATGCCCCAAGAATTTCATTACGAAGCAAACAATGAATCAGATGGTGGTTGTGGGCTCCAATATGGTACAAATGAGATAAATATTTCAGACTTTTTAAATTCAGATCTTAATTGGGATCAACTTCCGTATGTGGAGTCCGGTTGTCACCAGCAGATCTTTTCCTTGTTTAATGTTAAGGAGAATGGTTCAGGAAGCGACTCAGATGTGGAAGTAGCCAATATGACTGTAAGTAACAGCTCTAACACTATTTATAGTTTGGTCAATAATCAATATGGCAGGTTTTGTTGTGATAATAACATGCAGTAG 1182 0.4146 MGSIDCGPSLGDDGMAVLSLNSLPLGFRFRPTDEELIDYYLRQKINGNGDEVWVIREIDVCKWEPWDMPDLSVIRNKDPEWFFFCPQDRKYPNGHRLNRATTHGYWKATGKDRKIKSGTILIGMKKTLVFYSGRAPKGKRTNWVMHEYRPTLKELDGTNPGQNAYVLCRLFKKNDESLEVSNCGEVEQTTSAPMAANYSPEEIQSDAAPIAVSTSQVTEDDKHQNVIPEISEETISNVIASVDCHSDGYDAHDIQNKLAELAAQEDQMNFDIYYNPKEGLLDDRLFSPALVHMPQEFHYEANNESDGGCGLQYGTNEINISDFLNSDLNWDQLPYVESGCHQQIFSLFNVKENGSGSDSDVEVANMTVSNSSNTIYSLVNNQYGRFCCDNNMQ 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g02376 393 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 16 374 - -
Car05g02376 393 ProSiteProfiles NAC domain profile. 23 173 IPR003441 GO:0003677|GO:0006355
Car05g02376 393 SUPERFAMILY NAC domain 15 173 IPR036093 GO:0003677|GO:0006355
Car05g02376 393 Gene3D NAC domain 32 177 IPR036093 GO:0003677|GO:0006355
Car05g02376 393 PANTHER NAC DOMAIN-CONTAINING PROTEIN 91 16 374 - -
Car05g02376 393 Pfam No apical meristem (NAM) protein 24 149 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g02376 Car-Chr5 68923219 68927019 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g02376 15 206 NAC Transcription Factor Family AT4G35580 68.229 3.00e-92 285
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Car05g02376 NAM 1.1e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g02376 - - gmx:100777071 566.614