LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Car05g02354	ATGAGTGCCGGCGAGTTAGCATGCATCTACTCCATCTTGATGCTCCACGATGACGGAATCGCAATCACCGCGGAGAAGATTAACACTATCTTGAAGGCTGCTGGCGTCACTGTCGAATCATACTGGCCAAGCTTATTCGCCAAACTTGCTCAGAATAAGAGCATTGACGATCTCGTTTTGAACgctggcgctgccggtggtgccgccgttgccgtagctgctcctgccgcttctgctgctggtggagccgctgcagctgccgcacctgccgcCGAGGCCAAGAAGGAAGAGGCAAAGGAAGAAAGTGACGATGACATGGGCTTTAGTTTGTTTGATTAG	339	0.3481	MSAGELACIYSILMLHDDGIAITAEKINTILKAAGVTVESYWPSLFAKLAQNKSIDDLVLNAGAAGGAAVAVAAPAASAAGGAAAAAAPAAEAKKEEAKEESDDDMGFSLFD	112

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Car05g02354	112	MobiDBLite	consensus disorder prediction	90	112	-	-
	Car05g02354	112	PANTHER	60S ACIDIC RIBOSOMAL PROTEIN P1-1-RELATED	1	112	-	-
	Car05g02354	112	Hamap	50S ribosomal protein L12 [rpl12].	6	112	IPR027534	GO:0003735\|GO:0005840\|GO:0006414
	Car05g02354	112	Pfam	60s Acidic ribosomal protein	22	111	-	-
	Car05g02354	112	PRINTS	Ribosomal protein P2 signature	25	36	IPR001859	GO:0003735\|GO:0005840\|GO:0006412
	Car05g02354	112	PRINTS	Ribosomal protein P2 signature	84	98	IPR001859	GO:0003735\|GO:0005840\|GO:0006412
	Car05g02354	112	PRINTS	Ribosomal protein P2 signature	99	110	IPR001859	GO:0003735\|GO:0005840\|GO:0006412
	Car05g02354	112	PANTHER	60S ACIDIC RIBOSOMAL PROTEIN P1	1	112	-	-
	Car05g02354	112	MobiDBLite	consensus disorder prediction	92	106	-	-
	Car05g02354	112	CDD	Ribosomal_P1	5	61	-	-
	Car05g02354	112	Gene3D	-	1	63	IPR038716	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Car05g02354	Car-Chr5	68765636	68767715	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Car05g02354	1	112	Cytoplasmic Ribosomal Protein Gene Family	AT5G24510	54.386	5.23e-37	119

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Car05g02354	K02942		-	egt:105963624	120.553