Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Car05g02350 | ATGAGTAGTCGCTTTTCTCGCACAATCTATGTTGGCAACCTGCCTTCGGATATCAGAGAGTCAGAAATTGAAGATCTATTTTACAAGTATGGCCGTATAATGGAAATTGAATTGAAGGTTCCTCCCCGACCTCCGTGTTATTGTTTTGTTGAGTTTGACAATGCTCGAGACGCAGAGGATGCAATTCGGGGTCGGGATGGTTACAACTTTGACGGTTGCCGATTAAGGGTGGAGCTTGCCCATGGAGGTAGAGGGCAATCGTCAAGTGATCGACGTGGATAtggcggcggcggtggtggtggcggtggtggaggaggaggtgctggtgggggCCGATTTGGTGTCTCACGTCATTCTGAATTTCGAGTTATTGTTCGCGGGCTCCCATCTTCTGCATCCTGGCAAGATTTGAAGGATCATATGCGAAAAGCTGGTGATGTTTGTTTTGCTGAAGTTTCCCGTGATAGTGAAGGGACTTTTGGCCTTGTCGATTACACTAATTATGATGACATGAAATATGCCATTCGGAAACTGGATGACACGGAGTTTAGAAACCCTTGGGCGAGATCTTATATTCGGGTGAGGAAGTACGAGAGCAGTCGTTCAAGGAGTCGCAGCAGAAGCCCCAGCAGGAGCAGAAGTCCGAAAAGGGCTAGAAGTAGATCTTTGGAGCGATCTGTCTCTAGGTCGCGATCTATTTCCAGATCCAGATCCAGATCAGCATCACCAATCAAATCTTCCAGGCCAAgatcccgatcccgatcccgatcccgTTCAGCATCACCGCGATCTCCACGCCAGGTTCTATCAGGCAGCGGTTGA | 822 | 0.4282 | MSSRFSRTIYVGNLPSDIRESEIEDLFYKYGRIMEIELKVPPRPPCYCFVEFDNARDAEDAIRGRDGYNFDGCRLRVELAHGGRGQSSSDRRGYGGGGGGGGGGGGGAGGGRFGVSRHSEFRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGLVDYTNYDDMKYAIRKLDDTEFRNPWARSYIRVRKYESSRSRSRSRSPSRSRSPKRARSRSLERSVSRSRSISRSRSRSASPIKSSRPRSRSRSRSRSASPRSPRQVLSGSG | 273 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Car05g02350 | 273 | SMART | rrm1_1 | 8 | 78 | IPR000504 | GO:0003723 | |
| Car05g02350 | 273 | SMART | rrm1_1 | 122 | 195 | IPR000504 | GO:0003723 | |
| Car05g02350 | 273 | MobiDBLite | consensus disorder prediction | 196 | 273 | - | - | |
| Car05g02350 | 273 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 123 | 185 | IPR000504 | GO:0003723 | |
| Car05g02350 | 273 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 9 | 76 | IPR000504 | GO:0003723 | |
| Car05g02350 | 273 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 121 | 199 | IPR000504 | GO:0003723 | |
| Car05g02350 | 273 | SUPERFAMILY | RNA-binding domain, RBD | 6 | 188 | IPR035979 | GO:0003676 | |
| Car05g02350 | 273 | Gene3D | - | 121 | 198 | IPR012677 | - | |
| Car05g02350 | 273 | CDD | RRM2_SF2_plant_like | 121 | 196 | - | - | |
| Car05g02350 | 273 | PANTHER | SERINE/ARGININE-RICH SPLICING FACTOR SR34A | 2 | 261 | - | - | |
| Car05g02350 | 273 | CDD | RRM1_SF2_plant_like | 8 | 79 | - | - | |
| Car05g02350 | 273 | Gene3D | - | 2 | 118 | IPR012677 | - | |
| Car05g02350 | 273 | PANTHER | SERINE/ARGININE RICH SPLICING FACTOR | 2 | 261 | - | - | |
| Car05g02350 | 273 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 7 | 82 | IPR000504 | GO:0003723 | |
| Car05g02350 | 273 | MobiDBLite | consensus disorder prediction | 81 | 111 | - | - | |
| Car05g02350 | 273 | MobiDBLite | consensus disorder prediction | 232 | 248 | - | - | |
| Car05g02350 | 273 | MobiDBLite | consensus disorder prediction | 217 | 231 | - | - | |
| Car05g02350 | 273 | ProSiteProfiles | GCM domain profile. | 165 | 273 | IPR003902 | GO:0003677|GO:0006355 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Car05g02350 | Car-Chr5 | 68727089 | 68732159 | Dispersed/Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Car05g02350 | 2 | 205 | Eukaryotic Initiation Factors Gene Family | AT4G34110 | 23.005 | 1.96e-07 | 50.1 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Car05g02350 | K12890 | - | gmx:100800653 | 349.747 |