Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g02349 ATGGCGGTTGCTGAGAATGTTGGAACCAAAATCGGTTCTTCGGGTGAGAATTTGGAGAACAGTGTAGTTTCATCGGACTCAACTGAGGTTGAGAAATCGAAACCTAAGACCGATCAGAATCTGAACAATAACAACGGTGTGTTCAATCATCAACAACAAGATAGTGTTCCTAATGGTAATCATGGTTTCAAAGGGCATCAAATGGGTCAGATGCATGGTAATGGGGTTCAGAACCAGCACATGGTTGTGAACAATGATGGGTATGTGATGAATGGTGTTAGAGATGGAGAGAATGGGGGTGAGAGTTTCAAACGTGAGATGAGGGATTTGGAAGAGTTGTTGTCAAAGTTGAATCCTATGGCGGAGGAATTTGTGCCACCATCACTTGTAACCAATTATCATGGTTACTTAGCTGGACCTAATGTTGGTGGATTTGGTTATGCTAACAATATTATGCTTCAGAATAATTTTGGCAATGCTAATGGCCAGATTAATAGAAGGAGGAAGAATGGCTATAATAATGCGAAGCGAAGACTGAATCATAAAATGGATATGGAGAAAAGAGAAGAGATGATTCGGAAGACTGTTTATGTGTCTGACATTGATCAACTGGTCACTGAAGAGCAGCTGGCATCTCTCTTTCTCAACTGTGGCCAGGTTGTTGATTGCCGTGTATGTGGGGATCCCAATTCAATTCTTCGGTTTGCATTTGTTGAGTTTACAGATGAAGTTGGTGCTAGGACTGCATTGAACCTATCTGGAACCATGCTCGGATATTATCCGTTGAGAGTGCTACCTTCAAAGACTGCAATTGCACCTGTTAATCCAACATTTTTGCCCAGGTCTGAAGATGAGCGAGAGATGTGCACAAGAACAATTTATTGCACAAATATCGACAAGAAGCTTACTCAAGCAGATGTCAAACACTTCTTTGAATCTATTTGTGGAGAGGTTCAACGCCTGAGGCTTCTTGGGGATTACCATCATTCAACTCGAATTGCTTTTGTGGAGTTCGCTGTGGCTGAGAGTGCAATTGCAGCACTGAGCTGTAGCGGTGTGATTTTGGGTTCAATGCCTATAAGGGTAAGTCCGTCAAAGACACCAGTCCGAGCTCGTGCAACTCGTAGTCCCATGCACTGA 1140 0.4289 MAVAENVGTKIGSSGENLENSVVSSDSTEVEKSKPKTDQNLNNNNGVFNHQQQDSVPNGNHGFKGHQMGQMHGNGVQNQHMVVNNDGYVMNGVRDGENGGESFKREMRDLEELLSKLNPMAEEFVPPSLVTNYHGYLAGPNVGGFGYANNIMLQNNFGNANGQINRRRKNGYNNAKRRLNHKMDMEKREEMIRKTVYVSDIDQLVTEEQLASLFLNCGQVVDCRVCGDPNSILRFAFVEFTDEVGARTALNLSGTMLGYYPLRVLPSKTAIAPVNPTFLPRSEDEREMCTRTIYCTNIDKKLTQADVKHFFESICGEVQRLRLLGDYHHSTRIAFVEFAVAESAIAALSCSGVILGSMPIRVSPSKTPVRARATRSPMH 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g02349 379 MobiDBLite consensus disorder prediction 1 72 - -
Car05g02349 379 SMART rrm1_1 292 363 IPR000504 GO:0003723
Car05g02349 379 SMART rrm1_1 195 265 IPR000504 GO:0003723
Car05g02349 379 SUPERFAMILY RNA-binding domain, RBD 167 270 IPR035979 GO:0003676
Car05g02349 379 PANTHER POLYADENYLATE-BINDING PROTEIN-INTERACTING PROTEIN 12-LIKE 1 379 - -
Car05g02349 379 MobiDBLite consensus disorder prediction 10 28 - -
Car05g02349 379 Pfam Ataxin-2 C-terminal region 114 128 IPR009818 -
Car05g02349 379 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 196 259 IPR000504 GO:0003723
Car05g02349 379 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 293 360 IPR000504 GO:0003723
Car05g02349 379 MobiDBLite consensus disorder prediction 37 60 - -
Car05g02349 379 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 1 379 - -
Car05g02349 379 SUPERFAMILY RNA-binding domain, RBD 282 372 IPR035979 GO:0003676
Car05g02349 379 CDD RRM2_CID8_like 287 368 IPR034825 -
Car05g02349 379 Gene3D - 278 375 IPR012677 -
Car05g02349 379 Gene3D - 155 271 IPR012677 -
Car05g02349 379 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 291 367 IPR000504 GO:0003723
Car05g02349 379 CDD RRM1_CID8_like 192 271 IPR034823 -
Car05g02349 379 Coils Coil 169 189 - -
Car05g02349 379 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 194 269 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g02349 Car-Chr5 68719383 68724487 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g02349 193 362 Eukaryotic Initiation Factors Gene Family AT1G34140 26.437 5.64e-12 64.7