Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g02348 ATGTCACACACAAGGCAAAACAAGATGACGATGATGAATCCAAACGTTGCTGACACAACCTATACTAAGATTTTTGTTGGTGGTTTGGCTTGGGAGACCAAGAGAGACACACTCAAACGTTATTTTGATCAGTTTGGTGATATCTTAGAAGCTGTTGTTATCACTGACAGAACCACTGGAAAATCAAAAGGATATGGCTTTGTTACTTTCAAGGATCCAAATTCTGCAATACTAGCTTGCCAGAATCCTAATCCTGTAATTGATGGCAGAAGAGCTAATTGTAATCTTGCATCTCTAGGTGCACAAAAATCTGATCCATCATCAGGAACACAGAAATTCAATAGTCCTTCAAGGAATACTGCACCAATCCAATTTCAAGGTTTCTCAACTTATTACAATCAACATATACCACACTATCCGTTTCCTTATCCAGTTTATAGGTACCCCCACCCTGGTTATCCTCGTCCACAAGACATGTATGAAATGAACTATTATAATGTATATGGTGGACAACAATTTCCATTTCGCTGGTTTCCAGCATATTGGAAACCAGTTATCCCAACAGTATATGTGAAAAAGACACAAGAGTTCAATGTTGTTGGCATATCAGAACCAATTTCACCTTCTACTTCAATTTCAAGCAATGGATTAATCACAGAAACAGTAGCTGCAACAAGAGTAGTAGAACCTCCTAAAGATCAGAAATCTTCAGCTTAA 717 0.3794 MSHTRQNKMTMMNPNVADTTYTKIFVGGLAWETKRDTLKRYFDQFGDILEAVVITDRTTGKSKGYGFVTFKDPNSAILACQNPNPVIDGRRANCNLASLGAQKSDPSSGTQKFNSPSRNTAPIQFQGFSTYYNQHIPHYPFPYPVYRYPHPGYPRPQDMYEMNYYNVYGGQQFPFRWFPAYWKPVIPTVYVKKTQEFNVVGISEPISPSTSISSNGLITETVAATRVVEPPKDQKSSA 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g02348 238 MobiDBLite consensus disorder prediction 99 118 - -
Car05g02348 238 SUPERFAMILY RNA-binding domain, RBD 11 99 IPR035979 GO:0003676
Car05g02348 238 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIF) FAMILY PROTEIN 1 238 - -
Car05g02348 238 PANTHER BOULE-RELATED 1 238 IPR037366 GO:0003729
Car05g02348 238 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 24 82 IPR000504 GO:0003723
Car05g02348 238 Gene3D - 1 114 IPR012677 -
Car05g02348 238 CDD RRM_RBM24_RBM38_like 22 97 - -
Car05g02348 238 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 22 99 IPR000504 GO:0003723
Car05g02348 238 SMART rrm1_1 23 95 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g02348 Car-Chr5 68693441 68695264 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g02348 18 98 C2H2 Transcription Factor Family AT2G19380 41.975 1.66e-14 70.5