Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g02345 ATGATGATCCATATACGAAATGCTTTGCTCCTATGTTTTCTACTTCATAATTTTCATGTCATCATTTGCAGCAGCAACAACACAGACAGAGATATCCTTCTATCTTTCAAATTACAAGTAACTGATCCAAACAATGCTTTGTCAAGTTGGAGAACAGATTCCAATCACTGCACTTGGTATGGTGTCAACTGTTCCAAAGTTGATGAAAGAGTTCAATCTCTCAACTTATCAGGACTTAGTCTCTCTGGTAAACTACCCTTTAACCTCTCCAACCTCACTTACCTTCATTCACTTGACCTTTCCAAAAACACTTTTTATGGTCAAATTCCATTCCAGTTTGGTTATTTCTCACTCCTCAATTTCATTAAATTAGCTTTCAACAATCTCACTGGTACACTTCCACAACAATTGGGCCAACTCCATCATCTACAAAGTTTAGATTTTTCTGTCAATAGTCTCACAGGTAAAATCCCTTCAACATTTGGCAATCTCTTTTCTCTCAGAAGTCTTGCCTTGGCAAGAAACAAGTTTGTGGGTGAGATTCCAAGTGAATTGGGTAATCTCCACAATCTTTCACAACTTCAACTATCAGAGAACAATTTCACTGGCCAGTTTCCTACTTCTATCTTCTTCAACCTCCCTTCCTTAGTCTATTTATCCCTCACAAAGAACAATCTATCAGGCGAGTTGCCGCAAAATTTTGGCAACGCCTTTCCGAATTTAAGGACACTAGCTCTTGCAACCAATAGGTTTGAAGGTGTGATTCCTAAGTCTATATCCAATGCTTCACATCTTCAAATTATTGATCTTTCTAACAATAGATTTCATGGGTCAATACCACTATTCAACAACTTGAAAAACCTCACTCGTTTGACTCTTGGTAATAATTCTCTTACTTCCACCACATCATTGAATTTTCAGTTCTTTGATTCCCTTAGAAACTCTCCTCGGCTGGAAATTCTTATGGTCAATGATAATAACTTGGCTGGAGATCTTCCAAGTTCTGTTGCATATCTTTCTGGCAATCTACAACAGTTTTGTGTTGCTAATAATAAGCTAAATGGAAGCATTCCTAAGGGAATGAAGAAATTTCAAAATCTCACATCCTTCTCTTTTGAGCATAATGATTTCACTGGAGAGTTACCATTAGAACTAGGAACACTCAAGAAATTGGAGAGGTTATTGGTATACCAAAATAGATTGTCTGGTGAAATTCCAGACATATTTGGAAATTTTACAAATATGTTTGTTCTTGAAATAGGAAACAACCAATTCTCAGGTAGAATTCCCACGAGTATTGGACAATGCAAGAAATTGACTTCTCTTGACCTGGAAAGTAATAAGCTTGTTGGTGAAATACCAGAGGAGATTTTTCAACTCTCTGGCTTGACATCCTTGTACTTACAAGGAAACTCTCTGAATGGTTCGCTTCCTCCTGAATTCAACATGGAGCAACTAGAGACCATGAATATTTCAAATAACCAGCTGTCAGGTTACATTCCAAATATTGAACTAAAAGGCTTAAAGACTCTTGGGTTGGCAAGAAACAAATTTAATGGCACTATTCCAAATAGTCTAGGGGATTTAGCATCCCTTGTGAATTTGGATCTATCATCAAACAATCTCACTGGCCTTATTCCTGAGAGTTTAGAAAATCTTGAGTATATGGTGAGAttaaatttgtctttcaacaatttggaaggagaggttcctatgaaaggtgtttttctgaacctaagtcaggttgatctccaaggtaacaacaaactatgTAGCATCAGCAATGAAGTTATGCACAAGTTAGGTGTCACTTTGTGTGTTGCAAGTAAAAACAAGAAAAACATTTTACTCCCTATCATTCTAGCATGTATAGGTGCTGCTGTTTTATTCACTTCAATGTTCTATCTATTGTGGTTGCTAATGTCTCAAAAGAAGAAACACAAGGAGGAGAAAACAAGTTTGTCATCAACTCCTCTAAAGGTGTTGCCTCAAAATATATCCTATGGTGACATCAAGCTTGCTACAAACAATTTTGCAGctgcaaacttggttggaaaaggagggtttggctctgtttacaagggtgtgttcaacatcagcacttgtgaaaatcaaaccacacttgctgttaaaattctggacctacaacaaagcaaagcatctcagagttttagtgcagaatgtgaaactttgaaaaatgttaggcatcggaatctggttaaggtgatcacttcttgctccagcactgattataaaggagatgattttaaggcccttgttatgcaattcatgcctaatggtaatttagagacgagtttatacccgaacgatctcgagtcgggatctttgctaaccttgttgcaaaggttaaacattgccattgatgttgcatctgccatggactacttgcaccatgactgtgatccaccaatagttcattgtgatctgaaacctgctaatgtcctactagatgaagatatggttgcacatgtggcagattttggattagcaagatttctctctcaaaatccagcagagaaacatagtagcaccctggaactgaagggatccatcggctatattgcaccagAATATGGTTTAGGTGGCAAGGCTTCAACATGCGGCGATGTGTACAGTTTTGGAATCCTACTTCTAGAGATGTTCATAGCCAAAAAACCAACAGATGAAATGTTCAAAGAAAGCATGAACAAATTTGTTTCAGACATGGATGAGAAGCAGTTGCTGAAGGTTGTTGATCAAAGGCTTATTAACCATTATTATGAATACTCAACACAAGATTCCAGCAGTGATTGTCACAATGGTGGGTCTGGTGACAGCAGCCATAGCGATGGAGCTGATGGTAACATACATTGGATGCACAAAGTTGAGGAGTGCATAATTGCTGCAATGAGAGTTGGCTTGTCATGTATAGCACACCATCCCAAAGAACGGTGGACCATGAGAGAAGTCTCGTCAAAATTGCATGGAATTAAGCGGTCTATCCTAGGCTTGTGA 3015 0.2965 MMIHIRNALLLCFLLHNFHVIICSSNNTDRDILLSFKLQVTDPNNALSSWRTDSNHCTWYGVNCSKVDERVQSLNLSGLSLSGKLPFNLSNLTYLHSLDLSKNTFYGQIPFQFGYFSLLNFIKLAFNNLTGTLPQQLGQLHHLQSLDFSVNSLTGKIPSTFGNLFSLRSLALARNKFVGEIPSELGNLHNLSQLQLSENNFTGQFPTSIFFNLPSLVYLSLTKNNLSGELPQNFGNAFPNLRTLALATNRFEGVIPKSISNASHLQIIDLSNNRFHGSIPLFNNLKNLTRLTLGNNSLTSTTSLNFQFFDSLRNSPRLEILMVNDNNLAGDLPSSVAYLSGNLQQFCVANNKLNGSIPKGMKKFQNLTSFSFEHNDFTGELPLELGTLKKLERLLVYQNRLSGEIPDIFGNFTNMFVLEIGNNQFSGRIPTSIGQCKKLTSLDLESNKLVGEIPEEIFQLSGLTSLYLQGNSLNGSLPPEFNMEQLETMNISNNQLSGYIPNIELKGLKTLGLARNKFNGTIPNSLGDLASLVNLDLSSNNLTGLIPESLENLEYMVRLNLSFNNLEGEVPMKGVFLNLSQVDLQGNNKLCSISNEVMHKLGVTLCVASKNKKNILLPIILACIGAAVLFTSMFYLLWLLMSQKKKHKEEKTSLSSTPLKVLPQNISYGDIKLATNNFAAANLVGKGGFGSVYKGVFNISTCENQTTLAVKILDLQQSKASQSFSAECETLKNVRHRNLVKVITSCSSTDYKGDDFKALVMQFMPNGNLETSLYPNDLESGSLLTLLQRLNIAIDVASAMDYLHHDCDPPIVHCDLKPANVLLDEDMVAHVADFGLARFLSQNPAEKHSSTLELKGSIGYIAPEYGLGGKASTCGDVYSFGILLLEMFIAKKPTDEMFKESMNKFVSDMDEKQLLKVVDQRLINHYYEYSTQDSSSDCHNGGSGDSSHSDGADGNIHWMHKVEECIIAAMRVGLSCIAHHPKERWTMREVSSKLHGIKRSILGL 1004
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g02345 1004 ProSitePatterns Serine/Threonine protein kinases active-site signature. 811 823 IPR008271 GO:0004672|GO:0006468
Car05g02345 1004 SMART LRR_typ_2 188 212 IPR003591 -
Car05g02345 1004 SMART LRR_typ_2 164 187 IPR003591 -
Car05g02345 1004 SMART LRR_typ_2 529 552 IPR003591 -
Car05g02345 1004 SMART LRR_typ_2 285 311 IPR003591 -
Car05g02345 1004 SMART LRR_typ_2 213 236 IPR003591 -
Car05g02345 1004 SMART LRR_typ_2 460 483 IPR003591 -
Car05g02345 1004 SMART LRR_typ_2 140 163 IPR003591 -
Car05g02345 1004 SMART LRR_typ_2 238 261 IPR003591 -
Car05g02345 1004 SMART LRR_typ_2 388 411 IPR003591 -
Car05g02345 1004 Gene3D Transferase(Phosphotransferase) domain 1 764 1001 - -
Car05g02345 1004 Gene3D Ribonuclease Inhibitor 139 211 IPR032675 -
Car05g02345 1004 ProSitePatterns Protein kinases ATP-binding region signature. 684 711 IPR017441 GO:0005524
Car05g02345 1004 SUPERFAMILY L domain-like 339 594 - -
Car05g02345 1004 SUPERFAMILY L domain-like 49 334 - -
Car05g02345 1004 SUPERFAMILY Protein kinase-like (PK-like) 654 994 IPR011009 -
Car05g02345 1004 Gene3D Ribonuclease Inhibitor 212 599 IPR032675 -
Car05g02345 1004 MobiDBLite consensus disorder prediction 931 950 - -
Car05g02345 1004 SMART serkin_6 678 998 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car05g02345 1004 Pfam Protein tyrosine and serine/threonine kinase 682 911 IPR001245 GO:0004672|GO:0006468
Car05g02345 1004 ProSiteProfiles Protein kinase domain profile. 678 998 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car05g02345 1004 Pfam Leucine rich repeat 239 298 IPR001611 GO:0005515
Car05g02345 1004 Pfam Leucine rich repeat 507 566 IPR001611 GO:0005515
Car05g02345 1004 Pfam Leucine rich repeat 390 449 IPR001611 GO:0005515
Car05g02345 1004 Pfam Leucine Rich Repeat 142 164 IPR001611 GO:0005515
Car05g02345 1004 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 2 88 - -
Car05g02345 1004 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 163 995 - -
Car05g02345 1004 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 80 163 - -
Car05g02345 1004 SMART LRR_sd22_2 388 414 - -
Car05g02345 1004 SMART LRR_sd22_2 140 166 - -
Car05g02345 1004 SMART LRR_sd22_2 285 306 - -
Car05g02345 1004 SMART LRR_sd22_2 436 459 - -
Car05g02345 1004 SMART LRR_sd22_2 340 369 - -
Car05g02345 1004 SMART LRR_sd22_2 529 555 - -
Car05g02345 1004 SMART LRR_sd22_2 460 488 - -
Car05g02345 1004 Pfam Leucine rich repeat N-terminal domain 26 65 IPR013210 -
Car05g02345 1004 Gene3D Ribonuclease Inhibitor 28 138 IPR032675 -
Car05g02345 1004 PANTHER RECEPTOR-LIKE PROTEIN 55 80 163 - -
Car05g02345 1004 PANTHER RECEPTOR-LIKE PROTEIN 55 163 995 - -
Car05g02345 1004 PANTHER RECEPTOR-LIKE PROTEIN 55 2 88 - -
Car05g02345 1004 Gene3D Phosphorylase Kinase; domain 1 660 763 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g02345 Car-Chr5 68672057 68675683 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g02345 25 999 Receptor kinase-like Gene Family AT3G47570 39.823 0.0 669
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Car05g02345 PK_Tyr_Ser-Thr 1.9e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g02345 - - mtr:MTR_3g092390 1575.45