Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g02335 ATGATGGAGGATGAAGAGAATATTCATATTCATGAAGCATATTATAATAAAGGAAAAAATGTTGAAAGCATGAGTTGTTTAGAGACACCTAATCAGAATTCAAGgaagaaaaacaagaagatagaaaacaataagaggaGGTTTAGTGATGAACAAATAAGATCATTAGAATGTATATTCGAGTCCGAATCGAAGTTGGAGCCGAGGAAGAAGATGCAACTTGCTAGAGATCTTGGATTGCAGCCTCGACAAGTTGCTATATGGTTTCAGAACAGAAGAGCAAGGTGGAAATCAAAAAGGATTGAACAAGAATATAGAAAACTCAAAGATGAATATGATAATTTAGCTTCTAAGTTTCAGTCCCTAAAGGAAGAGAAAGAGTCTTTGCAATCAGAGTTGCAGAAGCTAAGTTATATGATGGAAACATGTCATGATGGTGGAAGGGAAGTTAAGGAAAATAGTACAGAAGATGGTGGTTCAGGAAATGGATACAGCAATTGCAGGGGCGAAGTAAAGAAAAGCTTTTCAAATGATCAAAATGAAAGAAGTACAATAAGGATTGATCAGAAAGATGAGGATAAAGGACATCAAGTTATGAGAAATGATGATAATGATCATGAAGAAATTCCCTTGACAACACTTGAAAAATGGTACAGTGTGGACCCAAGTGGTATCTTAGACTGCAACAGTTCTCAATGGTTAGATTTTTGGACATGA 717 0.3403 MMEDEENIHIHEAYYNKGKNVESMSCLETPNQNSRKKNKKIENNKRRFSDEQIRSLECIFESESKLEPRKKMQLARDLGLQPRQVAIWFQNRRARWKSKRIEQEYRKLKDEYDNLASKFQSLKEEKESLQSELQKLSYMMETCHDGGREVKENSTEDGGSGNGYSNCRGEVKKSFSNDQNERSTIRIDQKDEDKGHQVMRNDDNDHEEIPLTTLEKWYSVDPSGILDCNSSQWLDFWT 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g02335 238 Pfam Homeobox associated leucine zipper 99 140 IPR003106 GO:0006355|GO:0043565
Car05g02335 238 MobiDBLite consensus disorder prediction 174 206 - -
Car05g02335 238 Gene3D - 42 104 - -
Car05g02335 238 SMART HOX_1 41 103 IPR001356 GO:0003677
Car05g02335 238 MobiDBLite consensus disorder prediction 148 206 - -
Car05g02335 238 ProSiteProfiles 'Homeobox' domain profile. 39 99 IPR001356 GO:0003677
Car05g02335 238 MobiDBLite consensus disorder prediction 156 173 - -
Car05g02335 238 Pfam Homeodomain 44 97 IPR001356 GO:0003677
Car05g02335 238 Coils Coil 31 51 - -
Car05g02335 238 CDD homeodomain 46 100 IPR001356 GO:0003677
Car05g02335 238 PRINTS Lambda-repressor HTH signature 70 79 IPR000047 GO:0003677
Car05g02335 238 PRINTS Lambda-repressor HTH signature 79 95 IPR000047 GO:0003677
Car05g02335 238 PANTHER HOMEOBOX ASSOCIATED LEUCINE ZIPPER PROTEIN 13 238 - -
Car05g02335 238 SUPERFAMILY Homeodomain-like 27 99 IPR009057 -
Car05g02335 238 Coils Coil 91 139 - -
Car05g02335 238 ProSitePatterns 'Homeobox' domain signature. 74 97 IPR017970 GO:0000981|GO:0006355
Car05g02335 238 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 13 238 IPR045224 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g02335 Car-Chr5 68513602 68515318 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g02335 36 238 Homeobox Transcription Factor Family AT2G46680 41.152 9.68e-43 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Car05g02335 Homeodomain 2.4e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g02335 K09338 - gmx:100793260 316.235