Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g02297 ATGATAGCTCCAGCTCAGCCACCCATGCATAACCAACAACCCCCAATTTCTCCAAACTCCCCTGCAGTTGACTTCACTCCACCCTTAATAGCAATGGTCGTCGTTGTCGCCGCCGCCTTCCTCTTCGTAACCTATTCCCGCCTCATCAGTCGCCATCTAACACCTCCCATCCACCGTTTAATCCATCACTTCCAACGCCGCAGATTCCTCCCTCCCTCCTCCGCCACCTCATTAGTTGACGTCGAATCTCTTCAATACGATTCAACAACATTTGACGCCCCACACACTTACGGTTTAGACGAGTCCGTTATCAAAACCATTCCCTTCTTCATTTACACCACCAAATACGAACAAGAATCACGCCGTGACTGCGCCGTTTGTTTACTCGAATTTGAAGATCACGATTACGTTCGTACCCTCCCTCTTTGTTATCACACTTTTCATCTCGATTGTATTGACGCTTGGCTTCGTTCGCACGCTAACTGTCCTCTCTGTCGCGCCGGTCTTCTCTGTTCTGAATCTGAATCTCCTTTCAGACCTCTTATGGCCGCTAGAATTCGTCCTTCTTTTCACGATCAAACTATTAATCTTCACCTTGAAACGCCTTTTCATAATTCTCACTCTGTTTTGCCGGCGCCTGATATTACTCCTCAATCTCCCGTTGCGAATAATGTTGACGAGAATCGTTTTCAATTAAGGGAGGATTTTCTGTTGAAACGCTCTTATTCATTTGGTTTCGAGCGGAGTTTGCCGTCGGAGAGGATGGTAATCGACCCTGCCACGACTTCTCCGTGGCGGTATCGAAGGGGGAACACCGGTTTCTGGAGCAAAAGACCATCTCCGTTTGGTTCGTTAGGGAAATCAAGAGTGTTTTCGTTCAGGTATTATAGAGGGATGAAATCTCCATTTTTCCGGCGAAGAGGATTCTTTCCGTTGTCGGAATCGAGTGTTAGGTACGGCGAGGGAGGGAGCTGGTCGAGAAGGAGCAAATCAATTGCGAGTCCGATGTTTTCGAGGTCGTCTGCGGCGGTATTTTCGTCGAGCCGGCTGAGATGCGGTGATCCAGAGGCGTTACTGTCGCCGGAGAGGTTTAACAGACGGCGATGA 1107 0.4887 MIAPAQPPMHNQQPPISPNSPAVDFTPPLIAMVVVVAAAFLFVTYSRLISRHLTPPIHRLIHHFQRRRFLPPSSATSLVDVESLQYDSTTFDAPHTYGLDESVIKTIPFFIYTTKYEQESRRDCAVCLLEFEDHDYVRTLPLCYHTFHLDCIDAWLRSHANCPLCRAGLLCSESESPFRPLMAARIRPSFHDQTINLHLETPFHNSHSVLPAPDITPQSPVANNVDENRFQLREDFLLKRSYSFGFERSLPSERMVIDPATTSPWRYRRGNTGFWSKRPSPFGSLGKSRVFSFRYYRGMKSPFFRRRGFFPLSESSVRYGEGGSWSRRSKSIASPMFSRSSAAVFSSSRLRCGDPEALLSPERFNRRR 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g02297 368 ProSiteProfiles Zinc finger RING-type profile. 124 166 IPR001841 -
Car05g02297 368 SMART ring_2 124 165 IPR001841 -
Car05g02297 368 MobiDBLite consensus disorder prediction 1 20 - -
Car05g02297 368 MobiDBLite consensus disorder prediction 1 15 - -
Car05g02297 368 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 13 343 - -
Car05g02297 368 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 13 343 IPR044675 -
Car05g02297 368 SUPERFAMILY RING/U-box 108 173 - -
Car05g02297 368 Pfam Ring finger domain 123 166 IPR001841 -
Car05g02297 368 CDD RING-H2_PA-TM-RING 123 166 - -
Car05g02297 368 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 98 173 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g02297 Car-Chr5 68181251 68183822 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g02297 19 367 C3H Transcription Factor Family AT3G18930 51.042 2.43e-99 298
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g02297 - K19041 gmx:100806115 487.648