Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g02291 ATGGAGTTGGATAACATTGAGTGTGTGTCATCTTCTGATGGCATGGATGAAGATGAGATCCATCAACATCATCACTCTGAGTTTTCTTCAACAAAGCATAGAAATGGAGCCAACAATAATAATAATATTTTGGGTCCCACCGCTATTGCTCCTGCAACAAGCGTTCATGAATTGCTGGAATGTCCTGTTTGTACTAATTCAATGTACCCTCCAATTCATCAGTGTCACAATGGCCACACACTATGTTCCACATGCAAAACACGGGTGCATAACCGATGTCCCACTTGTAGACAAGAGCTTGGAGATATTAGGTGTCTGGCACTAGAAAAGGTGGCTGAATCACTTGAATTACCGTGCAAGTACTACTCCCTTGGATGTCCAGAAATCTTTCCATACTACAGCAAGCTTAAGCATGAAACAGTATGTAATTTTAGACCTTATAGTTGTCCTTATGCTGGATCAGAGTGTTCCGTTGTTGGAGATATTTCCTTCCTCGTCACTCATTTGCGGGATGATCATAAGGTGGACATGCACACGGGATGCACATTTAACCATCGTTATGTGAAGTCAAATCCCCGCGAAGTAGAGAATGCAACATGGATGCTCACAGTATTTCATTGTTTTGGCCAATATTTTTGCCTTCATTTCGAAGCCTTTCAGCTTGGAATGGCCCCTGTTTACATGGCATTCCTTCGTTTTATGGGCGACGAAAACGAAGCTCGGAACTACAGCTATAGCCTGGAAGTTGGGGGAAATGGCAGGAAACTAATTTGGGAGGGTACACCACGAAGTGTTCGGGATAGCCACCGTAAAGTCAGAGATAGCCATGATGGTCTCATCATTCAAAGAAATATGGCCCTATTTTTCTCTGGTGGGGATAGGAAGGAGCTGAAACTCAGAGTCACAGGAAGAATATGGAAGGAACAACAGAATCCAGATGCTGGAGTGTGCATACCTAATCTTTGTAGCTGA 972 0.4331 MELDNIECVSSSDGMDEDEIHQHHHSEFSSTKHRNGANNNNNILGPTAIAPATSVHELLECPVCTNSMYPPIHQCHNGHTLCSTCKTRVHNRCPTCRQELGDIRCLALEKVAESLELPCKYYSLGCPEIFPYYSKLKHETVCNFRPYSCPYAGSECSVVGDISFLVTHLRDDHKVDMHTGCTFNHRYVKSNPREVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDENEARNYSYSLEVGGNGRKLIWEGTPRSVRDSHRKVRDSHDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQQNPDAGVCIPNLCS 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g02291 323 MobiDBLite consensus disorder prediction 1 40 - -
Car05g02291 323 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 11 113 IPR013083 -
Car05g02291 323 Pfam Seven in absentia protein family 103 302 IPR018121 GO:0005737|GO:0006511|GO:0007275
Car05g02291 323 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 1 314 - -
Car05g02291 323 MobiDBLite consensus disorder prediction 14 31 - -
Car05g02291 323 ProSiteProfiles Zinc finger RING-type profile. 61 97 IPR001841 -
Car05g02291 323 SUPERFAMILY RING/U-box 50 103 - -
Car05g02291 323 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 165 302 IPR008974 GO:0005515
Car05g02291 323 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 114 164 IPR013083 -
Car05g02291 323 CDD Sina 175 303 - -
Car05g02291 323 CDD RING-HC_SIAHs 59 97 - -
Car05g02291 323 PANTHER E3 UBIQUITIN-PROTEIN LIGASE 1 314 - -
Car05g02291 323 ProSiteProfiles Zinc finger SIAH-type profile. 114 174 IPR013010 GO:0008270
Car05g02291 323 SUPERFAMILY TRAF domain-like 114 306 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g02291 Car-Chr5 68137469 68140973 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g02291 52 309 C3H Transcription Factor Family AT2G41980 80.620 1.23e-161 451