Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g02283 ATGATTATCAAGCGGAACTTGAAATCTCAAATGCCGAGGTTGAAACGGTGCAAAAACGCTGACTCAGTGGGTGAAGACGACGAGTGTTCTTATGTTCGTAAGAAGAGAAAGACGAGCGGTTCTTATTATCCTCTGAATCTTCTAGGAGATGTCGCCGCCGGATTAATTCCGGTGAGTTTTCACGGTCTTCTTAGTGCAGGTTTATCGGAGAAGGGATTCTCTGCGTCGTGGTGCACCCAAGTTCCGTGCTCCCCCGGTGAAGTTGAATCGAACTCGAAGGAAGAAATGGTTCCAGTGAAGAAAAACCAAGTTCAGCGACCACCACTTGTTCGAACTTCCAGAGGGAGAGTTCAGGTTCTTCCTTCTCGTTTTAATGACTCTGTTATTGATAATTGGAAGAAAGATAGTAGAACCAGCTTGCGTAATAATCATGTTGAAGATGAATTTGAATGCAAGAAGGATAGGGTGGTACCTAGAACTTGCCACAACAATGGTAAAAAAGGGCGAAACCATGAGAAAATCGGTTATAAACCACGCAAGTATTCGGCATTGTGTGGCAGGgatgatgaggataatgatgatgatgtgaGGTTTAAGAGTTTTGGTACAAGGAAGGATGAGAGAAGTAGTTACTTGGAGGTGGATGGAGATGAAGTTGATTTGATGGGTACCAGTGATAAAGTATTGAAGGAGAATGGAGAGAAGAAAGATGGGTTATATGGACCAGAAGATTTTTATGCAGGTGATATAGTGTGGGCCAAAGCTGGGAGGAAGGAACCTTTTTGGCCAGCTGTTGTTATTGATCCTACAAAACAAGCACCTGAGCTTGTCCTGAGGTCTTTTATAGCTGATGCTGCGTGTGTCATGTTTCTTGGCTATGCGGGGAATGAAAATCAAAGGGACTATGCATGGGTGAAGCATGGCATGATCTTTCCATATACGGATTATGTGGACAGGTTTCAAGAGCAACCTGAATTGAGTAACTATAATCCCTCTGAGTTTCAAATGGCAATAGAGGAGGCTTTTTTGGCAGACCAAGGCTTCACAGAGAAGTTGATGGATGATATAAATGCAGCAGCTGGTAACACTGGTTATGATGATATTATTCTGAAATCCTCCTTCAAGGAGGTCAATGGTTCAAACCGGTATGCAGGAGCAGGACAACATCTTGTTAATCAGGATTTATTTGATAAGAAAGACACATGTGAAGCCTGTGGATTGGATCTTTCTTACAAGATGTCAAAGAAAACCAAGGGTTTGACTCCTAATGGTCAATTCTTATGTAAAACATGTGCAAGGTTAACGAAATCAAAACATTATTGTGGCATATGCAAGAAAGTTTGGAACCATTCGGATAGTGGAAGCTGGGTGCGCTGTGATGGATGTAAAGTGTGGGTGCATGCCGAATGCGACAAAATTTCTAGAAACCATTTCAAGGATCTTGAAGGCACCGATTATTACTGCCCTACTTGCAGAGCCAAGTTTGACTTTGAGTTATCTGATTCAGAAAAATCAAAGCCAAAAGTGAAATTGAACAGAAACAATGGCCAACTAGTACTTTCAAATAAGGTCACTGTTCTCTGCAATGGTGTGGAAGGCATATATTTTCCAAGCCTTCACTTAGTTGTGTGCAAGTGTGGTTTTTGCGGGAAAGAAAAGCAAGCGCTTAGCGAATGGGAACGACACACAGGTTCCAAATTAAGAGATTGGAAAACAAGTATCAGCGTGAAAGACTCTAGGCTATCTCTGGAACAATGGATGCTGCAGGTAGCAGAATTTCATGCTAATGCTCAAGTTTCTTCAAAACCTAAAAAACCATCCTTAAAGGAAAGGAAGCAGAAGTTGCTTGCTTTCTTGAAAGagaggtatgaacctgtttatgctaagtggactacggagcgttgtgctgtttgtagatgggttgaagactgggattacaataaaattatcatttgcaacagATGTCAAATAGCCGTTCACCAAGAATGCTATGGAGCAAGAAATGTTCGAGACTTTACATCTTGGGTCTGTAAGGCCTGTGAAACACCTGAGATCAAGCGGGAGTGTTGTCTTTGTCCCGTAAAAGGTGGTGCTCTAAAGCCAACTGATATTGACACATTATGGGTTCATGTCACCTGTGCTTGGTTTCGACCTGAAGTCTCGTTCGCTAGTGATGAGAAGATGGAACCTGCTTTGGGTATTCTTAGTATTCCATCAAATTCTTTTGTGAAGATTTGTGTTATTTGCAAACAAATCCATGGTTCGTGCACACAGTGTTGCAGATGTTCCACTTATTACCATGCCATGTGTGCATCAAGAGCTGGTTACCGAATGGAGTTGCATAGTTTTAAGAAATATGGAAAGCAGACAACAAAAATGGTTTCGTATTGTGCTTACCACAGAGCTCCAAATCCAGACACTGTTTTGATTTTGCAAACCCCTCTTGGGGTCATTTCAACAAAAAGCCTTCTCCAAAAGAGAAAAGCTGGGTCAAGGTTAATCTCATCTAGCAGAATAAAGGAAGAAGACACTCCTAATGATATTGCCGAGAATGACCCGTTCTCTGCTGCTAGGTGTCGTATCTTTAAAAGAACAAATCATACCAAAAAGAGAGAAGTAAATGAAGCTGTTTTTCATCAAGTGAGGGGTCACTGCCACCATCCCTTAGATGCAATACAGAGTTTAAATACATACAGAGCAGTAGAGGAGCCTCAGACGTTCTCTTCTTTCAGAGAACGCCTTTACCACTTGCAGAGAACCGAAAATGAAAGGGTTTGCTTTGGTAGATCTGGCATACATGGATGGGGTTTATTTGCACGAAGGAATATTCAAGAAGGAGAAATGGTTCTTGAATATCGTGGCGAACAAGTGAGACGCAGCATCGCTGATCTGAGGGAGGCACGCTATAGAGCAGAAGGGAAAGATTGCTACCTGTTTAAGATAAGTGAAGAAGTGGTGGTAGATGCCACTGATAAAGGGAATATAGCACGACTAATAAATCATTCTTGTATGCCAAATTGCTATGCAAGGATCATGAGTGTTGGTGATGACGAGAGCCGGATTGTACTCATCGCTAAGGCTAATGTATCTGCTGGTGATGAGCTAACATATGACTACTTATTCGATCCTGATGAGCCAGATGAATTTAAAGTCCCCTGCCTGTGTAAAGCGCCAAATTGCCGGAAATTCATGAACTAG 3198 0.4046 MIIKRNLKSQMPRLKRCKNADSVGEDDECSYVRKKRKTSGSYYPLNLLGDVAAGLIPVSFHGLLSAGLSEKGFSASWCTQVPCSPGEVESNSKEEMVPVKKNQVQRPPLVRTSRGRVQVLPSRFNDSVIDNWKKDSRTSLRNNHVEDEFECKKDRVVPRTCHNNGKKGRNHEKIGYKPRKYSALCGRDDEDNDDDVRFKSFGTRKDERSSYLEVDGDEVDLMGTSDKVLKENGEKKDGLYGPEDFYAGDIVWAKAGRKEPFWPAVVIDPTKQAPELVLRSFIADAACVMFLGYAGNENQRDYAWVKHGMIFPYTDYVDRFQEQPELSNYNPSEFQMAIEEAFLADQGFTEKLMDDINAAAGNTGYDDIILKSSFKEVNGSNRYAGAGQHLVNQDLFDKKDTCEACGLDLSYKMSKKTKGLTPNGQFLCKTCARLTKSKHYCGICKKVWNHSDSGSWVRCDGCKVWVHAECDKISRNHFKDLEGTDYYCPTCRAKFDFELSDSEKSKPKVKLNRNNGQLVLSNKVTVLCNGVEGIYFPSLHLVVCKCGFCGKEKQALSEWERHTGSKLRDWKTSISVKDSRLSLEQWMLQVAEFHANAQVSSKPKKPSLKERKQKLLAFLKERYEPVYAKWTTERCAVCRWVEDWDYNKIIICNRCQIAVHQECYGARNVRDFTSWVCKACETPEIKRECCLCPVKGGALKPTDIDTLWVHVTCAWFRPEVSFASDEKMEPALGILSIPSNSFVKICVICKQIHGSCTQCCRCSTYYHAMCASRAGYRMELHSFKKYGKQTTKMVSYCAYHRAPNPDTVLILQTPLGVISTKSLLQKRKAGSRLISSSRIKEEDTPNDIAENDPFSAARCRIFKRTNHTKKREVNEAVFHQVRGHCHHPLDAIQSLNTYRAVEEPQTFSSFRERLYHLQRTENERVCFGRSGIHGWGLFARRNIQEGEMVLEYRGEQVRRSIADLREARYRAEGKDCYLFKISEEVVVDATDKGNIARLINHSCMPNCYARIMSVGDDESRIVLIAKANVSAGDELTYDYLFDPDEPDEFKVPCLCKAPNCRKFMN 1065
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g02283 1065 CDD SET_SETD1-like 910 1061 - -
Car05g02283 1065 SMART set_7 923 1046 IPR001214 GO:0005515
Car05g02283 1065 Gene3D - 242 348 - -
Car05g02283 1065 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 3 1065 IPR025780 -
Car05g02283 1065 ProSitePatterns Zinc finger PHD-type signature. 635 680 IPR019786 -
Car05g02283 1065 SMART PHD_3 440 492 IPR001965 -
Car05g02283 1065 SMART PHD_3 745 801 IPR001965 -
Car05g02283 1065 SMART PHD_3 634 681 IPR001965 -
Car05g02283 1065 Pfam SET domain 934 1039 IPR001214 GO:0005515
Car05g02283 1065 ProSiteProfiles Extended PHD (ePHD) domain profile. 686 801 IPR034732 -
Car05g02283 1065 CDD PHD_TCF19_like 441 491 - -
Car05g02283 1065 CDD ePHD_ATX3_4_5_like 689 800 IPR041955 -
Car05g02283 1065 Pfam PHD-finger 440 493 IPR019787 -
Car05g02283 1065 ProSiteProfiles Zinc finger PHD-type profile. 438 494 IPR019787 -
Car05g02283 1065 PANTHER PHD FINGER PROTEINS 1 1065 - -
Car05g02283 1065 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 627 683 IPR013083 -
Car05g02283 1065 ProSiteProfiles Zinc finger PHD-type profile. 632 683 IPR019787 -
Car05g02283 1065 Gene3D SET domain 833 1065 IPR046341 -
Car05g02283 1065 SUPERFAMILY FYVE/PHD zinc finger 633 697 IPR011011 -
Car05g02283 1065 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 434 496 IPR013083 -
Car05g02283 1065 ProSiteProfiles PWWP domain profile. 247 316 IPR000313 -
Car05g02283 1065 SUPERFAMILY SET domain 912 1065 IPR046341 -
Car05g02283 1065 SUPERFAMILY Tudor/PWWP/MBT 240 344 - -
Car05g02283 1065 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 684 803 IPR013083 -
Car05g02283 1065 SUPERFAMILY FYVE/PHD zinc finger 439 495 IPR011011 -
Car05g02283 1065 Pfam PHD-finger 647 681 - -
Car05g02283 1065 ProSiteProfiles Post-SET domain profile. 1049 1065 IPR003616 -
Car05g02283 1065 CDD PHD_ATX3_4_5_like 634 680 IPR042011 -
Car05g02283 1065 Pfam PHD-zinc-finger like domain 688 800 - -
Car05g02283 1065 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ATX4 1 1065 - -
Car05g02283 1065 Pfam PWWP domain 248 341 IPR000313 -
Car05g02283 1065 ProSiteProfiles SET domain profile. 923 1040 IPR001214 GO:0005515
Car05g02283 1065 SMART PostSET_3 1049 1065 IPR003616 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g02283 Car-Chr5 68048165 68056659 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g02283 635 800 C2H2 Transcription Factor Family AT3G14740 33.526 8.48e-21 93.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Car05g02283 zf-HC5HC2H_2 1.3e-27 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g02283 - - aprc:113853254 1804.65