Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g02272 ATGCTGTTCAGATTTCAGGACTGGAATTCAGACAAAGGTTCTGAGATGAACTCTCCTGCAATTCACGTAACACGCTCAGGGAGAATTAGAACTACACTAAAATCAGTTTCTTACAAATTTCAAAGGGGATTTGAATTTAGTTCTGAGAGGATAAAGGGATTTGCAAAACCATTCAAATCTTTTTCCCACAACAGTTCTCTTGCTAAATGCTTTAGTTCTAGAAAGAAAATACTCGATCCGCAGGGTCCTTTTCTTCAAAAGTGGAACAAAATATTTGTGTTATCATGTCTTATTGCTGTATCAATTGATCCTTTGTTCTTCTATATCCCTGTGATTGATGATGAGAAGAAATGTCTTGCACGGGACAGAAAAATGGAAACCACGGCAACTGTGTTAAGGTCTTTCTCCGATATTTTTTATATTATCCATATAATTTTCCAATTTCGTACTGGGTTTATTGCTCCCTCTTCTCGGGTATTTGGAAGAGGTGTTTTGGTTGAAGATGCTTGGGCAATAGCAAAGAGATATATGTCATCATACTTCTTAATTGACATTCTTGCCGTTCTTCCCCTCCCGCAGGTGGTGATTTTATTTATTATTCCGAAGATGAGAGGCTCAGAATCACTGAACACAAAAAACTTGTTGAAATTCATTGTCTTCTTCCAATATATGCCACGCTTTATACGAATAGTTCCATTATATAAAGAAGTTACAAGGACCTCTGGCATTCTCACTGAAACAGCTTGGGCTGGAGCTGCATTCAATCTCTTTCTGTACATGCTTGCAAGTCATGTTATTGGTGCCTTTTGGTACTTGTTTTCTATAGAAAGAGAAACCACGTGTTGGCAACATGCATGTCGAAAAAATATCACCTGTAACAAGGTGGAGATGTATTGTGATGATCATCATGGTTTGGGCACAATTTCAACATTCCTGAATGCTTCATGCCCAGTACAGAATCCAAATAATACGCTTTTTAATTTTGGAATTTTTCTTGATGCCCTTCAATCTGGGGTTGTGGAGTCAACAGATTTCCCTCAGAAATTTTTTTATTGTTTTTGGTGGGGCCTAAAAAATTTGAGTTCTCTCGGTCAGAACCTGGCAACAAGTACCTTTGTTTGGGAAATCTGCTTTGCAATTTTCATTTCCATTGCTGGTTTGGTATTATTTGCATTCCTCATTGGAAATATGCAGACATATTTGCAGTCAACAACGACAAGATTGGAGGAGATGAGAGTGAAAAGGAGAGATGCAGAACAATGGATGTCTCATCGATTACTCCCTGACAGCTTGAGAGAAAGAATCAGACGACATGAGCAGTACAAATGGCAAGAAACCAGAGGAGTTGATGAGGACAATTTGATTCATAATCTTCCCAAGGATTTAAGAAGGGATATTAAGCGTCATCTTTGCTTGGCTTTGCTGATGAGGGTGCCAATATTTGAGAAAATGGATGAGCAACTTTTAGATGCAGTATGTGACCGTCTGAAAACAGTACTTTACACAAAACAAAGCTGCATTGTCCGCGAAGGAGATCCTGTTGACGAGATGCTCTTCATAATGCGCGGCAAGTTATTGACTGTGACAACTAACGGTGGAAGAACAGGTTTCTTTAACTCCGAATACCTCAAGGCTGGTGACTTCTGTGGAGAAGAGCTTCTCACGTGGGCATTGGATCCTCATTCCTCATCCAACCTTCCCATCTCAACCAGGACTGTCCAAACTCTTTCAGAAGTGGAAGCCTTTGCTCTGAAAGCTGAGGATTTGAAGTTTGTTGCATCTCAATTCCGGCGCCTTCACAGTAAACAGCTTCGCCACACTTTCAGGTTTTACTCGCAACAATGGCGTACTTGGGCTGCATGTTTCATACAAGCAGCATGGAGGCGTTATTGTAAAAAGAAGCTTGAAGAGTCTCTAAGGGAAGAGGAGAATAGGTTGCAAGATGCATTGGCCAAGGAAGGTGGTAGTTCACCTAGCCTAGGGGCCACAATATATGCTTCAAGATTTGCGGCTAATGTGCTTCGAGCTTTACGTAGAAATAGCACAAGGAAGACCAGGGTGCCAGAGAGATTACCTCCCATGCTGCTCCAGAAGCCTGCTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTGATTTCACTGCTGAAGAGCAATAG 2208 0.3945 MLFRFQDWNSDKGSEMNSPAIHVTRSGRIRTTLKSVSYKFQRGFEFSSERIKGFAKPFKSFSHNSSLAKCFSSRKKILDPQGPFLQKWNKIFVLSCLIAVSIDPLFFYIPVIDDEKKCLARDRKMETTATVLRSFSDIFYIIHIIFQFRTGFIAPSSRVFGRGVLVEDAWAIAKRYMSSYFLIDILAVLPLPQVVILFIIPKMRGSESLNTKNLLKFIVFFQYMPRFIRIVPLYKEVTRTSGILTETAWAGAAFNLFLYMLASHVIGAFWYLFSIERETTCWQHACRKNITCNKVEMYCDDHHGLGTISTFLNASCPVQNPNNTLFNFGIFLDALQSGVVESTDFPQKFFYCFWWGLKNLSSLGQNLATSTFVWEICFAIFISIAGLVLFAFLIGNMQTYLQSTTTRLEEMRVKRRDAEQWMSHRLLPDSLRERIRRHEQYKWQETRGVDEDNLIHNLPKDLRRDIKRHLCLALLMRVPIFEKMDEQLLDAVCDRLKTVLYTKQSCIVREGDPVDEMLFIMRGKLLTVTTNGGRTGFFNSEYLKAGDFCGEELLTWALDPHSSSNLPISTRTVQTLSEVEAFALKAEDLKFVASQFRRLHSKQLRHTFRFYSQQWRTWAACFIQAAWRRYCKKKLEESLREEENRLQDALAKEGGSSPSLGATIYASRFAANVLRALRRNSTRKTRVPERLPPMLLQKPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXDFTAEEQ 735
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g02272 735 Coils Coil 632 652 - -
Car05g02272 735 Gene3D - 91 404 - -
Car05g02272 735 CDD CAP_ED 480 611 IPR000595 -
Car05g02272 735 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL-LIKE PROTEIN 3 701 - -
Car05g02272 735 ProSiteProfiles cAMP/cGMP binding motif profile. 480 564 IPR000595 -
Car05g02272 735 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 3 701 - -
Car05g02272 735 SMART cnmp_10 480 611 IPR000595 -
Car05g02272 735 Gene3D Helix hairpin bin 406 471 - -
Car05g02272 735 Gene3D Jelly Rolls 478 598 IPR014710 -
Car05g02272 735 Pfam Ion transport protein 88 407 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Car05g02272 735 Pfam Cyclic nucleotide-binding domain 500 591 IPR000595 -
Car05g02272 735 SUPERFAMILY cAMP-binding domain-like 409 602 IPR018490 -
Car05g02272 735 SUPERFAMILY Voltage-gated potassium channels 79 402 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g02272 Car-Chr5 67940165 67945249 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g02272 4 700 Ion Channels AT5G53130 79.601 0.0 1135
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g02272 K05391 - gmx:100817516 1245.34