Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g02268 ATGAAACATATGATTTTTCTACTTGTCACTTTCAAGATAATAAAGAAGAAGCTAACGAAGCTACGAGAGAGTATGGGGTTTCAAACAACACATAACACTAAGCGGATTTCACAACCTATTTTGAAGGCAAAGGAAGAAGCGAGCGATAGTCATGAACCAAGGGGACTCAATTTGACTCATCATACTCTAACCAATACCAATTTCATTCCCTATGATTCATGGCTGGTAAGGCACCCTTCTGCGTTGAGCTCATTTGATAGATTGATGAAAGCTGCCACTGGAAAGAGGATTGTCGTATTTTTAGATTACGATGGTACCTTATCCCCCATTGTAAATGACCCTGATCGCGCTTTCATGTCTGATGAGATGCGTACGGCAGTACGTGAAGTTGCTACTTATTTTCCAACAGCAATTATTAGTGGAAGAAGCAGAGAAAAGGTAAAAGATTTCGTGAAATTAAATAATTTATATTATGCTGGGAGTCATGGTATGGACATAATGGCACCATCGATGCCAATTAGATCTTCTGACGGCAAGCAACTCGACACTATTCTTGACACAAATGGCAATGAAGTTCCCTTTCAACCTGCCAAGAAGTTTTTGCCTGCAATTCAAGAGATATTAAGAAGGTTAGAGAATGTAATAAAGGACATAGAAGGTGCAAAAATAGAAGACAATGGATTCTGCATCTCTGTACATTTCCGCCAGGTTCATGAAAAGGATTATAACGTTTTGGAAGAGAAAGTGAAGTCTGTACTTGGAAAAAATCCACTCTTTTGCGTGACTGAGGGTAAAAAGGTTATGGAAATTAGGCCATCAATAGAATGGAACAAAGGAAATGCTGTAGAATATTTTCTAGACACATTAGGATTAAGCAGTTCCAACAATATCCTCCCTGTGTATATTGGTGATGATAAAACTGATGAAGATGCTTTTAAGGTTATACAAACAAGAGGGCAAGGTTATCCAATTATAGTGTCTTCAATTCCAAGAGAAACAAGTGCTTTGTACTCTTTGCATGACCCATCAGAAGTATTAATCTTCTTGTCAAGGCTAGCAAAATGGAAGAAGGCATCTTGCTCAAGAAGGCCTTTAAAAATTGGTAACTAA 1110 0.3802 MKHMIFLLVTFKIIKKKLTKLRESMGFQTTHNTKRISQPILKAKEEASDSHEPRGLNLTHHTLTNTNFIPYDSWLVRHPSALSSFDRLMKAATGKRIVVFLDYDGTLSPIVNDPDRAFMSDEMRTAVREVATYFPTAIISGRSREKVKDFVKLNNLYYAGSHGMDIMAPSMPIRSSDGKQLDTILDTNGNEVPFQPAKKFLPAIQEILRRLENVIKDIEGAKIEDNGFCISVHFRQVHEKDYNVLEEKVKSVLGKNPLFCVTEGKKVMEIRPSIEWNKGNAVEYFLDTLGLSSSNNILPVYIGDDKTDEDAFKVIQTRGQGYPIIVSSIPRETSALYSLHDPSEVLIFLSRLAKWKKASCSRRPLKIGN 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g02268 369 Pfam Trehalose-phosphatase 100 343 IPR003337 GO:0003824|GO:0005992
Car05g02268 369 Coils Coil 204 224 - -
Car05g02268 369 Gene3D - 183 364 IPR023214 -
Car05g02268 369 Gene3D - 97 180 IPR023214 -
Car05g02268 369 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 34 362 IPR044651 GO:0004805|GO:0005992
Car05g02268 369 SUPERFAMILY HAD-like 98 356 IPR036412 -
Car05g02268 369 TIGRFAM T6PP: trehalose-phosphatase 94 354 IPR003337 GO:0003824|GO:0005992
Car05g02268 369 TIGRFAM HAD-SF-IIB: HAD hydrolase, family IIB 99 318 IPR006379 -
Car05g02268 369 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 34 362 - -
Car05g02268 369 CDD HAD_TPP 98 345 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g02268 Car-Chr5 67872210 67875642 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g02268 95 364 Trehalose Biosynthesis Gene Families AT1G23870 27.273 3.75e-11 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g02268 K01087 - gmx:100819120 551.592