Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g02262 ATGGATGAAAGTTTATATGATATTTTTGAGGACAGAACAGAATTTGGAAACAACCATTTTGGTTCAACAGATGATGATCTTTTTGCTATTTTGGAGAGTTTAGAAGATTTCACTGATTTTCCTCTAATCAAAGAAGCTGAAGCTGTTACTACTCCAAAAGAGAATGAAGATACTTCGAGATTGGTGTCTCAAAAGTCAACAACCTCTTCAAATTTTCCACAACAAGATTCTGAAACTGAACTTGAAACTTGTCCAAAAAGTAAGAGACAGAAACTTACACCTACTTTGGTAGAGGAACAAATTAACAGTGATGGACAACAAAAGGTTTCACACATTACTGTTGAGCGTAACAGAAGAAAACAAATGAATGAGCACTTGTCTGTTTTAAGGTCACTCATGCCTTGCTTTTATGTCAAAAGGGGAGATCAAGCATCAATAATTGGAGGAGTGGTTGATTACATCAACGAGTTACAACAACTACTACAAGCACTTGAAGCCAAGAAACAAAGAAAAGTATACAATGAAGTACTAAGTCCAAGGATAGTTTCAAGCCCAAGACCTTCACCACTAAGCCCAAGAAAACCACCACTAAGCCCTAGACTAAACCTACCCATTAGTCCAAGAACTCCAACACCAAGTAGCCCTTATAAACCAAGATTGCAACAAAGCTACAATTTTAATTCACTTTCACCTACCATATCAATTCCTGTTGAGCCAtctcctactacttcttcttccacttcttcAGTCAATGATAATATCAATGAGCTTGTTGCTAATTCAAAATCTCATATTGCTGACGTGGAGGTCAAGTTTTCAGGTCCACATGTTCTTTTGAAAACGGTTTCTCAAAGAATTCCAGGGCAAGCTTTGAAGATTATATCGACACTTGAAGACCTTGCCCTTGAAATCCTTCATGTCAATATTAATTGTTCCTCTGATGATACCATGTTGAACTCATTCACTATCAAGATTGGAATTGAATGCCAACTGAGTGCGGATGAACTTGCTCAACAAATCCAGCAAACATTCTGCTAA 1038 0.3603 MDESLYDIFEDRTEFGNNHFGSTDDDLFAILESLEDFTDFPLIKEAEAVTTPKENEDTSRLVSQKSTTSSNFPQQDSETELETCPKSKRQKLTPTLVEEQINSDGQQKVSHITVERNRRKQMNEHLSVLRSLMPCFYVKRGDQASIIGGVVDYINELQQLLQALEAKKQRKVYNEVLSPRIVSSPRPSPLSPRKPPLSPRLNLPISPRTPTPSSPYKPRLQQSYNFNSLSPTISIPVEPSPTTSSSTSSVNDNINELVANSKSHIADVEVKFSGPHVLLKTVSQRIPGQALKIISTLEDLALEILHVNINCSSDDTMLNSFTIKIGIECQLSADELAQQIQQTFC 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g02262 345 MobiDBLite consensus disorder prediction 61 80 - -
Car05g02262 345 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 105 180 IPR036638 GO:0046983
Car05g02262 345 MobiDBLite consensus disorder prediction 181 221 - -
Car05g02262 345 PANTHER TRANSCRIPTION FACTOR FAMA 1 345 IPR044283 GO:0003700|GO:0010052
Car05g02262 345 Coils Coil 150 174 - -
Car05g02262 345 PANTHER - 1 345 - -
Car05g02262 345 CDD bHLH_AtFAMA_like 110 182 - -
Car05g02262 345 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 106 157 IPR011598 GO:0046983
Car05g02262 345 Pfam Helix-loop-helix DNA-binding domain 107 158 IPR011598 GO:0046983
Car05g02262 345 Gene3D - 98 172 IPR036638 GO:0046983
Car05g02262 345 MobiDBLite consensus disorder prediction 185 214 - -
Car05g02262 345 MobiDBLite consensus disorder prediction 50 89 - -
Car05g02262 345 SMART finulus 112 163 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g02262 Car-Chr5 67811357 67814510 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g02262 1 325 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G53210 50.409 4.82e-89 269
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Car05g02262 HLH 1.9e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g02262 K20558 - gmx:100777437 435.261