Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g02260 ATGGAACAGAACAATAACAAGAGTATCCTATGCAAATACACAGAGCATCAGACTGTCACAAAAAAACTCATCAAAACAACAAAAACAGTTAACAACAAAACTGTAGAACCCAGAGTTGTACGAATATCCGTTACCGACCCAGACGCAACCGACTCATCCAGCGACGAAGAAGGAGAACAAACTTTCTTCCGAAACAGAACCAAACGCTATATCAACCGTATCGAAATCGAAACCACCGTCAAACCCGCCGTCAACAGAAAAAGACCCGCCGGAGAAACATCCACCGTCAAACGACCTGCCAAAGTTCCTGCTATCACCACCGGGAAAAAATTCCGCGGTGTTCGGCAGAGACCATGGGGTAAATGGGCGGCTGAGATTCGAGATCCTGCTCGGAGGGTTCGTCTTTGGTTAGGAACCTTCGAAACCGCAGAAGAAGCTGCAATGGTTTACGACAATGCCGCGATTAAGCTTCGTGGACCAGACGCTTTAACAAATTTCATAACTCCGCCGCAGAAGGAAACCTCCCCCGTGAAACCCGTCATGAAGGTCGTCGTCGACGGtgaaactgaaaccgaagctgaacctcaagctTCTAGATATTGTTACGACTCCGGCGAATGTATTCCGGTTTCATCTCCAACTTCGGTTCTTAATTTCCGGAGTAGTAACTGTAACTCCGGCGAGTCACAAGAATCAGAAGAAACAAGTGAAGTTTCAGAAGTTTTCAGAGAGTGTGAAGGTGAAACTAATTTGTTCGATGAAACGGCGCAGTTTTATCAAATGGATATGCCTACTTGGGATGATGTGTTTAATTTCCAAACTCCAGAGTTTTCTTTGATGTTTGAAGAAGAAAACTGTAAAATGTTTGGGGAGAATACTACGCCGTTTTTGTGTGGTGATGATTTAAACGACAGCATTGTTCTTGCTGACTCACTCATTGATTTTGACAAAGCATGTTTTCCTTCTTCACCTTCTCCTTCATCATCTTTCTGCCAAGTGGAGGATGATTTCTTTCAAGATATTTTGTTATCTTCAGATCCTCTAGTTTTGCTTTGA 1056 0.4242 MEQNNNKSILCKYTEHQTVTKKLIKTTKTVNNKTVEPRVVRISVTDPDATDSSSDEEGEQTFFRNRTKRYINRIEIETTVKPAVNRKRPAGETSTVKRPAKVPAITTGKKFRGVRQRPWGKWAAEIRDPARRVRLWLGTFETAEEAAMVYDNAAIKLRGPDALTNFITPPQKETSPVKPVMKVVVDGETETEAEPQASRYCYDSGECIPVSSPTSVLNFRSSNCNSGESQESEETSEVSEVFRECEGETNLFDETAQFYQMDMPTWDDVFNFQTPEFSLMFEEENCKMFGENTTPFLCGDDLNDSIVLADSLIDFDKACFPSSPSPSSSFCQVEDDFFQDILLSSDPLVLL 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g02260 351 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR CRF4-LIKE 8 285 - -
Car05g02260 351 Gene3D AP2/ERF domain 109 168 IPR036955 GO:0003700|GO:0006355
Car05g02260 351 PRINTS Ethylene responsive element binding protein signature 111 122 IPR001471 GO:0003700|GO:0006355
Car05g02260 351 PRINTS Ethylene responsive element binding protein signature 133 149 IPR001471 GO:0003700|GO:0006355
Car05g02260 351 SMART rav1_2 110 173 IPR001471 GO:0003700|GO:0006355
Car05g02260 351 ProSiteProfiles AP2/ERF domain profile. 110 167 IPR001471 GO:0003700|GO:0006355
Car05g02260 351 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 8 285 - -
Car05g02260 351 SUPERFAMILY DNA-binding domain 110 166 IPR016177 GO:0003677
Car05g02260 351 CDD AP2 109 166 IPR001471 GO:0003700|GO:0006355
Car05g02260 351 Pfam AP2 domain 110 159 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g02260 Car-Chr5 67770445 67772247 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g02260 11 343 AP2-EREBP Transcription Factor Family AT4G27950 39.773 6.04e-58 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Car05g02260 AP2 3.6e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g02260 - - adu:107460630 361.303