Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g02252 ATGTCAAGCAATGCATTAAAGCTTTTTATCTTGTTTTTTACTATCTCCTTGTTTCCATTCATTTCTTCTCTAAACCAAGAAGGTCTCTCTCTACTTTCATGGCTTTCAACTTTCAATTCATCCAACTATGTCAGTACTACCTTCTCGTCATGGGATCCATCTCAGAAAAATCCATGCAGATGGGACTATATAAAGTGTTCTGCAGAAGAGTTTGTTGAAGAGATCATAATAACATCGATCGATCTTCGTAGCGGTTTTCCTACACAGTTCCTTTCTTTTAACCACCTTACAACTCTTATCATCTCAAATGGAAATCTCACAGGAGAGATTCCAAGTTCAGTTGGAAACTTGTCATCTCTAGTTACTCTTGACCTTAGCTTCAATACTTTAACAGGAACCATTCCAAAAGAAATAGGAAAGTTATCTGAACTAAGATGGTTATCTTTGAATTCAAATTCATTACATGGAAAAATTCCAACCACAATTGGAAACTGTTCAAAGCTTCATCAGCTGGAACTTTTTGACAACCAGCTTTCCGGTATGATTCCCGGAGAAATAGGCCAGTTGAAGGCTCTTGAATCGCTGAGAGCAGGCGGAAATCAAGGTATATTTGGCGAAATTCCAATGCAGATATCAGATTGTAAGGCTTTGGTTTTTCTTGGACTTGCAGTTACTGGAATTTCTGGTGAGATTCCATCAAGTATAGGAGAACTTCAGAATCTCAAGACACTTTCAGTCTACACAGCACATCTCACAGGTCAAATTCCACCAGAGATTCACAACTGTTCAGCTTTGGAAGATTTGTTTCTGTATGAAAATCAGCTTAATGGAAACATTCCTTATGAATTAGGTTCCATGCAAAGCCTCAAAAGGGTTTTACTGTGGCAGAACAATTTAACTGGAAACATTCCTGAAAATCTTGGAAACTGCACAAGTCTGAAGGTTATTGATTTCTCTTTGAATTCTCTTATTGGTCAGTTACCTTTGAGTCTCAGTAAACTACTCTCATTGGAGGAACTTCTTTTGTCTGATAATAACATTTATGGAGAAATACCTTCATATGTTGGCAATTTTTCCATGTTGAAGCAACTTGAATTAGATAACAACAAATTCTCTGGTGAGATTCCATCTGTTATAGGGAATCTGAAGGAACTCACACTCTTCTTTGCTTGGCAGAATCAGCTTCATGGAAGTATACCAACAGAACTATCTAACTGTCAGAAACTTGAAGCGATTGATCTTTCGCACAATTTCCTTACTGGTCCGATTCCAAATTCTCTCTTTCATCTAAAGAATTTAACTCAGTTGTTGCTGATATCAAACAGACTTTCAGGTCAAATTCCACCTGATATTGGCAGCTGCATAAGTTTGATCAGGTTAAGACTAGGATCAaacaactttaccggtcgaattccacaagaaataggccttttgagaagtttgagttttctagagttgtcttataatcaactcagtggagatattcCTTATGAGATAGGTAACTGTGCTCATCTAGAAATGCTTGACTTGCACAGCAATGAACTCCAAGGAACCATTCCTTCCTCATTAAAATTCCTCGCCAGCCTTAATGTATTGGATCTTTCTTCAAACAGAATAACAGGAACCATTCCCAAGAGTTTTGGCAAACTTACATCTTTAAATAAGTTGATTCTAAATGGAAACCTTATCACTGGTTTAATCCCTCAGTCACTAGGCCTTTGTAAGGATTTGCAGTTGCTTGATTTAAGTAACAATAGAATCATTGGTTCTATTCCAAATGAGATTGGTTACTTGCAAGGATTGGATATTCTCTTGAACTTGAGTTGGAATTCTCTTACTGGTTCCATTCCAATGACTTTCTCTAATCTCTCAAAACTTTCCATATTGGACCTCTCTTACAACAAGCTCACAGGCACACTCATAGTACTTGGTGATCTTGACAATCTTGTGTCTCTAAATGTTTCCTACAATAAATTCTCCGGGACTCTTCCGGACACGAAGTTCTTCCGGGACCTACCAGCGGCTGCGTTCGCTGGTAACCCTGATCTTTGTATTAACAAGTGTCATGCAAGTGAAAATCTACAAGGCAACAAGTCAATAAGGAATATTATTATCTTCACTTTCCTTGGAGTTATTTTAACTTCTGCTATTGTCACTTGTGGAGTGATATTAGCACTGCGGATTCAAGGGAACAGTTATGGGAGTAGTAATGATTTTGATCATGAAGGTGAACTGGAATGGTCTTTCACTCCATTCCAAAAGCTTAACTTCTCCATCAATGACATTGTAACAAAGTTGTCTGATTCAAACATTGTTGGAAAGGGCTGCTCGGGCGTTGTTTATCGTGTCGAGACTCCAACAAGACAGGCTATTGCAGTGAAGAAACTATGGCCAATAAAGAATGAAGAGACACAAGAGAGGGATCAGTTTACAGCAGAAGTTCAGACGCTTGGATCAATAAGGCATAAAAATATAGTGAGACTTTTAGGATGCTGCGACAACGGAAGAACTAGAATGCTCTTGTTTGATTACATATGTAATGGAAGTTTGTTTGGATTGCTTCATGAAAAGAGATTGTTCTTGGATTGGGATGCAAGGTACAAGATCATACTAGGAGCAGCTCATGGTTTAGAATATCTTCATCATGATTGTATCCCTCCCATCGTCCATCGCGATATTAAGGCTAACAACATCTTGGTAGGTCCAATGTTTGAGGCTTTTCTTGCAGATTTTGGCCTTGCAAAATTGATCATTTCATCAGAGTGTGCAGGAGCTTCTAATGTTGTCGCAGGTTCTTATGGATACATAGCTCCTGAATATGGATACAGTTTAAGGATCACAGAGAAAAGTGATGTATACAGTTATGGTGTTGTGCTACTTGAGATTTTAACTGGAATGGAGCCAACAGATAACAGAATTCCAGAGAATGCTCACATTGTAACATGGGTTATCAGTGAAATCAGAGAGAAGAAAAGAGAGTTCACAACTATCCTTGATCAGCAATTAGTATTGCAATGTGGAACAAGAATTCCAGAGATGCTTCAAGTGTTAGGAGTGGCTCTTTTATGTGTGAATCCGTCCCCGGAAGAACGACCGACGATGAAAGATGTAACGGCAATGCTCAAGGAGATCAGACTTGCAAATGATGATTTGGATAAACCAAATGTTCTCAATAAATGCATGGTTGTTACCAATCCAAAAGCAGCAGTTCATTGTTCAAGTTTCTCAAGATCATGTGAACTTTTGATAGAATCATCATCCTCTTCTTCATAG 3273 0.3727 MSSNALKLFILFFTISLFPFISSLNQEGLSLLSWLSTFNSSNYVSTTFSSWDPSQKNPCRWDYIKCSAEEFVEEIIITSIDLRSGFPTQFLSFNHLTTLIISNGNLTGEIPSSVGNLSSLVTLDLSFNTLTGTIPKEIGKLSELRWLSLNSNSLHGKIPTTIGNCSKLHQLELFDNQLSGMIPGEIGQLKALESLRAGGNQGIFGEIPMQISDCKALVFLGLAVTGISGEIPSSIGELQNLKTLSVYTAHLTGQIPPEIHNCSALEDLFLYENQLNGNIPYELGSMQSLKRVLLWQNNLTGNIPENLGNCTSLKVIDFSLNSLIGQLPLSLSKLLSLEELLLSDNNIYGEIPSYVGNFSMLKQLELDNNKFSGEIPSVIGNLKELTLFFAWQNQLHGSIPTELSNCQKLEAIDLSHNFLTGPIPNSLFHLKNLTQLLLISNRLSGQIPPDIGSCISLIRLRLGSNNFTGRIPQEIGLLRSLSFLELSYNQLSGDIPYEIGNCAHLEMLDLHSNELQGTIPSSLKFLASLNVLDLSSNRITGTIPKSFGKLTSLNKLILNGNLITGLIPQSLGLCKDLQLLDLSNNRIIGSIPNEIGYLQGLDILLNLSWNSLTGSIPMTFSNLSKLSILDLSYNKLTGTLIVLGDLDNLVSLNVSYNKFSGTLPDTKFFRDLPAAAFAGNPDLCINKCHASENLQGNKSIRNIIIFTFLGVILTSAIVTCGVILALRIQGNSYGSSNDFDHEGELEWSFTPFQKLNFSINDIVTKLSDSNIVGKGCSGVVYRVETPTRQAIAVKKLWPIKNEETQERDQFTAEVQTLGSIRHKNIVRLLGCCDNGRTRMLLFDYICNGSLFGLLHEKRLFLDWDARYKIILGAAHGLEYLHHDCIPPIVHRDIKANNILVGPMFEAFLADFGLAKLIISSECAGASNVVAGSYGYIAPEYGYSLRITEKSDVYSYGVVLLEILTGMEPTDNRIPENAHIVTWVISEIREKKREFTTILDQQLVLQCGTRIPEMLQVLGVALLCVNPSPEERPTMKDVTAMLKEIRLANDDLDKPNVLNKCMVVTNPKAAVHCSSFSRSCELLIESSSSSS 1090
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g02252 1090 PRINTS Leucine-rich repeat signature 529 542 - -
Car05g02252 1090 PRINTS Leucine-rich repeat signature 623 636 - -
Car05g02252 1090 ProSitePatterns Serine/Threonine protein kinases active-site signature. 888 900 IPR008271 GO:0004672|GO:0006468
Car05g02252 1090 SUPERFAMILY RNI-like 85 396 - -
Car05g02252 1090 Gene3D Ribonuclease Inhibitor 185 388 IPR032675 -
Car05g02252 1090 Pfam Leucine Rich Repeat 408 430 IPR001611 GO:0005515
Car05g02252 1090 Pfam Leucine rich repeat N-terminal domain 25 67 IPR013210 -
Car05g02252 1090 Gene3D Ribonuclease Inhibitor 24 184 IPR032675 -
Car05g02252 1090 SUPERFAMILY Protein kinase-like (PK-like) 763 1059 IPR011009 -
Car05g02252 1090 Gene3D Transferase(Phosphotransferase) domain 1 845 1062 - -
Car05g02252 1090 SUPERFAMILY L domain-like 279 601 - -
Car05g02252 1090 SUPERFAMILY L domain-like 526 760 - -
Car05g02252 1090 Pfam Leucine rich repeat 605 659 IPR001611 GO:0005515
Car05g02252 1090 Pfam Leucine rich repeat 95 154 IPR001611 GO:0005515
Car05g02252 1090 Pfam Leucine rich repeat 528 587 IPR001611 GO:0005515
Car05g02252 1090 SMART serkin_6 766 1041 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car05g02252 1090 ProSiteProfiles Leucine-rich repeat profile. 576 598 IPR001611 GO:0005515
Car05g02252 1090 ProSitePatterns Protein kinases ATP-binding region signature. 772 800 IPR017441 GO:0005524
Car05g02252 1090 PANTHER LRR RECEPTOR-LIKE KINASE 3 1062 - -
Car05g02252 1090 ProSiteProfiles Protein kinase domain profile. 766 1046 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car05g02252 1090 Gene3D Ribonuclease Inhibitor 392 693 IPR032675 -
Car05g02252 1090 Gene3D Phosphorylase Kinase; domain 1 736 844 - -
Car05g02252 1090 SMART LRR_typ_2 286 310 IPR003591 -
Car05g02252 1090 SMART LRR_typ_2 117 140 IPR003591 -
Car05g02252 1090 SMART LRR_typ_2 430 454 IPR003591 -
Car05g02252 1090 SMART LRR_typ_2 526 549 IPR003591 -
Car05g02252 1090 SMART LRR_typ_2 478 502 IPR003591 -
Car05g02252 1090 SMART LRR_typ_2 646 679 IPR003591 -
Car05g02252 1090 SMART LRR_typ_2 550 573 IPR003591 -
Car05g02252 1090 SMART LRR_typ_2 141 165 IPR003591 -
Car05g02252 1090 SMART LRR_typ_2 334 358 IPR003591 -
Car05g02252 1090 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 3 1062 - -
Car05g02252 1090 Pfam Protein kinase domain 769 1038 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g02252 Car-Chr5 67686211 67690159 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g02252 23 1080 Receptor kinase-like Gene Family AT5G56040 47.043 0.0 922
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Car05g02252 Pkinase 2.7e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g02252 - - gmx:100807225 1768.44