Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g02228 ATGGATGATTCTTCTTCAGCTGCTGAAGACACAAAGACTTGTCCACGTGGTCACTGGAGACCAGCTGAAGATGAAAAGCTTCGACAACTTGTTGAACAATATGGTGCCCAAAATTGGAATTCAATTGCTGAAAAACTCCAAGGAAGATCAGGGAAAAGTTGTAGGTTGAGGTGGTTCAATCAACTAGACCCAAGAATTAACAGAAGACCATTCACAGAAGAGGAAGAAGAGAGATTACTTGCAGCTCGTCGTATTCATGGTAACAAATGGGCACTTATAGCAAGACTTTTCCCTGGTAGAACTGATAATGCTGTCAAGAATCATTGGCATGTTATTATGGCAAGAAAACAAAGGGAACAATCCAAGTTATTATGTGGTAAAAGAAGTTTCCAACATCTTTataataataataatattgatgatcataaCACCTCTCAACAACAACAAAATCTATTATTCAGCTCAAGAATTGGATATGACAATGGAAGGTTCTATGATAAAGATCATAGGATAGTTAATAATATTAATATTGTTGATACTCCTTCTAGTTCTCTTGCTTCTTGGAATTTTGCTTCTGTTCCAACAACATTAAACAGTTCCAAAGGTTCAGATAGATTTCTCTATAGAATTTGTCCAAATCCAACATTTTCATCACTTCCAAACTACAAAAGGGTTGTTACAAATCCTTTTGGTTTTTTTGGTTCTTCTGATCATGATGGAAAGATAAAGAAGGATTTAATGACATCAACATTAATCACAAACTTAAGATCTTCCAAGGAGAAGGAGCAAGATCATCATCATGAGGCTAATATTAATGAGCACAAAGAAGAAGTTCCTTTCATTGATTTTCTTGGTGTTGGTGTCTCTTCATCATAA 876 0.3482 MDDSSSAAEDTKTCPRGHWRPAEDEKLRQLVEQYGAQNWNSIAEKLQGRSGKSCRLRWFNQLDPRINRRPFTEEEEERLLAARRIHGNKWALIARLFPGRTDNAVKNHWHVIMARKQREQSKLLCGKRSFQHLYNNNNIDDHNTSQQQQNLLFSSRIGYDNGRFYDKDHRIVNNINIVDTPSSSLASWNFASVPTTLNSSKGSDRFLYRICPNPTFSSLPNYKRVVTNPFGFFGSSDHDGKIKKDLMTSTLITNLRSSKEKEQDHHHEANINEHKEEVPFIDFLGVGVSSS 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g02228 291 SMART sant 67 115 IPR001005 -
Car05g02228 291 SMART sant 15 64 IPR001005 -
Car05g02228 291 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Car05g02228 291 PANTHER TRANSCRIPTION FACTOR MYB56 5 289 - -
Car05g02228 291 CDD SANT 19 60 IPR001005 -
Car05g02228 291 Gene3D - 16 67 - -
Car05g02228 291 ProSiteProfiles Myb-like domain profile. 16 62 IPR001005 -
Car05g02228 291 MobiDBLite consensus disorder prediction 1 21 - -
Car05g02228 291 Pfam Myb-like DNA-binding domain 19 79 - -
Car05g02228 291 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Car05g02228 291 Gene3D - 70 150 - -
Car05g02228 291 PANTHER MYB PROTEIN-RELATED 5 289 - -
Car05g02228 291 SUPERFAMILY Homeodomain-like 15 109 IPR009057 -
Car05g02228 291 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 11 62 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g02228 Car-Chr5 67491689 67493573 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g02228 14 291 MYB Transcription Factor Family AT1G17950 44.484 4.03e-67 208
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Car05g02228 Myb_DNA-bind_6 1.9e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g02228 K09422 - gmx:100802283 382.489