Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g02220 ATGGAGAGTACTTCTTCTCCTTCTTGCATCATTGTTGCTTGTGACGCCACAAGGGACCGCAATGAGCACGAGATCAAGCTCGTTATTGATCATATGCGTTCCAAGGGTATCATTCTCTCTGCTGGTGTCAGGTTGCTTATGCTCTGCATCTTGCATAAGGTGTCTCACCCCATGGGGTACCAGACATTAGCATCTCCGGAGACTTTTGCTGGCACCAACTTTCGTGCAATGGAGGAAGAAGTCAGAAAAAAAGTGCATGTATATGCAAATGAGCTTTTATCAAGTCTTGAAGATTTTGAAATTGAAGGGGTTACCTTTGACATTCAAGTCACAGCAGGTTTTCCAATTAGACAGATTATTCTGCAAGAGGTTAAAAACTATAAAGCATCTTGGATTATACTTGATAGACACCTTCGGCGCGATATGAGATTCCACCTTAACAAGATACCATGTAAGGTTGCATTGGTTAAAGATGACTTGTCTGTGGATTTATGGAGATGTCATAATGCAGATGACACAAATGTCACAGAAACAAAGCCTGTCTATTCTTTGTCCAAGTTTGTTTCATTATCAGATTGCCATAGCATGCAAGACATTGAGCAGTGTATTATCTCTTGCAAAAGTTATCCACATTCAATAGCTTCTTCTGATAGCTCTGGTTCTATTAAGAGCTATTCGATGCATTCATATGCCAACAGGTCATCCGAGCGCAACTCATTAGTTTCTAGATCTTCTTCTAAGCATGAAAGATCAGGTATAAACATCACAGGAGAATATAGAAATCTCATTACTTCACAAATTGGCCAAAAGCAAAACCAATGTGGCTTTCTACCAAAATCTTCAGATGCGCCAATTCTATGTACTGGTTGTGGAATAAGGACAGGGTTATCAATCAAGGAGTCAAATAGGTTCAGCTATTCTGAAATACAGCTTGCAACAAATGATTTTTCAAAGGATAACTTAATAGGTGAAGGTGGATATGGTCATGTATACAAGGGTGTGCTTAAAGATGGACAACAAGTTGCTGCAAAAGTAAGGAAAGATGAAAGTACACAAGGGTTTTCTGAATTTCATTCTGAGGTTTATGTCTTGAGTTTTGCTAGACACAAGAATATAGTGATGCTGTTGGGTTATTGTTGTAAGGAAAATAAAAATATTCTGATATATGAATATATTTGCAATAAGTCTCTTCATTGGCATTTATTTGAAAATACTGAAGCAGTTCTTGATTGGCCTCAAAGATATGGTATTGCACTTGGGACTGCAAAGGGATTGCGTTTTCTACATGAGGAATGTCGAGGTGGTCCTATTATTCATAGGGACATGCGACCAAGCAATATACTTCTCACTCATGATTTTGTTCCCATGCTGGGTGACTTTGGCCTTGCCAAATGGAGTACTGGTGATGATCCTATGCAAACAAGGATAATGGGCACATTTGGATACCTTGCTCCTGAGTATGCTGAAGATGGTATTGTTTCTGAAGGAACAGATGTATATTCTTATGGTGTTACTCTGTTACAATTGATATCAGGACGCCAAGTGGGTAATTTCAATAATCCAGATCAGCAACAACAATCTCTCAGACAATGGGCTGAGCCAATAATTGAGAAGTTGGTTTTACAAGAACTGATCGATCCTCGTTTGGGGGAATCATATGACACATATGAACTATACCTTATGGCTAAAGCAGCAAATTTCTGTATGCATAGAAAGCCTGAGATGCGTCCATCAATGAGAGAGGTTGTGCGCCTTCTTGAGGGAGAAAGTTACCATTTCCATACCCTGGATGGTCAATTTGTATCAAGCCATAACACTTGA 1821 0.3932 MESTSSPSCIIVACDATRDRNEHEIKLVIDHMRSKGIILSAGVRLLMLCILHKVSHPMGYQTLASPETFAGTNFRAMEEEVRKKVHVYANELLSSLEDFEIEGVTFDIQVTAGFPIRQIILQEVKNYKASWIILDRHLRRDMRFHLNKIPCKVALVKDDLSVDLWRCHNADDTNVTETKPVYSLSKFVSLSDCHSMQDIEQCIISCKSYPHSIASSDSSGSIKSYSMHSYANRSSERNSLVSRSSSKHERSGINITGEYRNLITSQIGQKQNQCGFLPKSSDAPILCTGCGIRTGLSIKESNRFSYSEIQLATNDFSKDNLIGEGGYGHVYKGVLKDGQQVAAKVRKDESTQGFSEFHSEVYVLSFARHKNIVMLLGYCCKENKNILIYEYICNKSLHWHLFENTEAVLDWPQRYGIALGTAKGLRFLHEECRGGPIIHRDMRPSNILLTHDFVPMLGDFGLAKWSTGDDPMQTRIMGTFGYLAPEYAEDGIVSEGTDVYSYGVTLLQLISGRQVGNFNNPDQQQQSLRQWAEPIIEKLVLQELIDPRLGESYDTYELYLMAKAANFCMHRKPEMRPSMREVVRLLEGESYHFHTLDGQFVSSHNT 606
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g02220 606 Gene3D Transferase(Phosphotransferase) domain 1 393 597 - -
Car05g02220 606 ProSitePatterns Protein kinases ATP-binding region signature. 322 344 IPR017441 GO:0005524
Car05g02220 606 PANTHER RECEPTOR-LIKE KINASE 8 598 - -
Car05g02220 606 Gene3D Phosphorylase Kinase; domain 1 292 391 - -
Car05g02220 606 Gene3D HUPs 2 157 IPR014729 -
Car05g02220 606 ProSiteProfiles Protein kinase domain profile. 316 592 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car05g02220 606 ProSitePatterns Tyrosine protein kinases specific active-site signature. 437 449 IPR008266 GO:0004672|GO:0006468
Car05g02220 606 PANTHER OS01G0253100 PROTEIN 8 598 IPR045271 GO:0004714|GO:0006468
Car05g02220 606 Pfam Protein kinase domain 317 583 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car05g02220 606 CDD STKc_IRAK 322 588 - -
Car05g02220 606 SUPERFAMILY Protein kinase-like (PK-like) 300 586 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g02220 Car-Chr5 67418758 67423384 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g02220 294 587 Trihelix Transcription Factor Family AT5G38560 44.518 7.71e-79 261
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-2 Car05g02220 Pkinase 5.4e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g02220 - - vun:114163670 954.896