Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g02200 ATGGGAACTGAGGATGGAATACGCAATACTGGTAACACTGAATGTGCTGAAGGGTTTCAGTGTTTGAAACGCAAAGCTATTTCTGATGGGGTGGTAATTTCCAATGGAAATGGTGTTGCTGAAGAGCCTCCACGCTTGAAAAGCGAATCCGTGAATGGCGGGGCTGTGTTTTCCAATGGGAATGGTGTTGCTGACGTGGCTGGGGTTGTGAAAAGTGAATTGTTGAATAATGGGGTGAATGGAAATGGTGTTATTGAGGGGGCTGGATTCTTGAAAAGTGAAGCCATTAGCAATGGAGTCGTAATTTCAGATGGGTTTGATTCTGGCGACGGGGACTCTAGTGGATTTACAAGTCTTCGAACTTATAAGAGGCGAAAGCATGATCAGTCAAGTTCAAAAGGCAAAGCTCAGGAGGATTGCAGAAAATGTGCGGAAACTGCAAGTCGTATAGCAGATCAGGTTGTGAAGGAACCCTTTGATGCAACTTTAGGCAAAACTGCAGATGATTGTCCCCATAGACATTGGGGAAATGCTGTACTAAAGCATTTATATCAGTCATTAGGCAATGGCAATGGTGGCATAGAGGGGTGCATAGGGGAGGCACTAATTCACCATACTCAAATAAGCTGTGCCACTACAGTTATGCAGGGAACTTCTAAAATTGACAAAGATGGACAAGAGTTCTCTTCACAAGTTGATCGCTTATCTCATAGAACACGGACCAAAGCTAATGGGCATGCACATGTCATGCAAAATGGATCTTCTAGTGAACCCCATGGCCGTGGTGTGACTGAGATGTGTCAGCGTGTGCTCTGCAATATGTTAACCTCAGAAAAGTTCAGCTCATTATGCAAGACTTTATTTGAAAATTTCCAAGGAATGAAGCCTGAAAGTGTATTTGATTTTAGTGTTATGAACTCAAGGATGAAACAGAAAACTTATGAACAATCACCTGCACTTTTCTTGTCAGATATTGAACAGGTCTGGAGAAAGCTACAAGATACTTGTAATGAGATTTTCGCTCTTGCTAAGAGCCTCTCCACCATGTCAAGAACTTCCTACTGTGAGCTGGTTGGAGTTTCAGCACAAAGCACATTTGAAGATGAAAAGCAAGTGGAATTCGGCTCTCACATAAAACCAGAGACGATGGAAGAATGTGATACGTATAAAATATGCTGCTGCAGTCATTGTGGAGAAAGGGCAGATGGCACAGACTGTTTGGTCTGTGATTCATGTGAGAAGATGTACCATCTGTCCTGTATTGAGCCTGCAGTGAAAGAAATACCGCACAAAAGCTGGTATTGTGCCAATTGCACCACAGATGGCATTGGATCTCCGCATGCGAATTGTGTAGTATGTATGAGGTTGAATGACATAAAGACTTCCAAGAAAATAATTGGTGATGAAAGCCTCCCTACGAATGAGGAAACACTTCATGAATTTGAAGAGAATTCAAATTGCAGCTATGATGGGATTCAAATATCTACAGGTGGCGAAAAGGTGCCCGATTGCAAAGTGTGTGGAAATGAAGTTGAGGGTGGAAAAATAAAAGTATGCGGTCACCGTTATTGCCCCAGTAAATACTACCATGCAAGGTGTTTGACTAGCAAGCTATTAAAGTCATATGGTAATTGTTGGTACTGCCCTTCTTGTTTATGCCAAGTTTGCGTCACCGATCAAGATGATGATCAGATTGTCCTCTGTGATGGCTGCGATCATGCATATCACATCTATTGCATGAAACCTCCACTAGCTTCTATTCCAGAAGGGAAATGGTTCTGCAAAAAGTGTGATGCCGGAATCAAAGCAATATCTCAGGCAAAAAAGGCATATGAGAAAAACAAGCCGAGAACAAGTGAAAATGTTTCAAAGCCAAAGGCCAATAATGAAAACAAATTCAGTAATAACTATGTACTAGCATTGGAAAGTGGTGGAGGAATGGACATGCTTTTAACTGCAGCCAATTCTCTGAATTTTGAAGAGAATTTGGCTGAAAACCAGATTGAGTAG 2010 0.4194 MGTEDGIRNTGNTECAEGFQCLKRKAISDGVVISNGNGVAEEPPRLKSESVNGGAVFSNGNGVADVAGVVKSELLNNGVNGNGVIEGAGFLKSEAISNGVVISDGFDSGDGDSSGFTSLRTYKRRKHDQSSSKGKAQEDCRKCAETASRIADQVVKEPFDATLGKTADDCPHRHWGNAVLKHLYQSLGNGNGGIEGCIGEALIHHTQISCATTVMQGTSKIDKDGQEFSSQVDRLSHRTRTKANGHAHVMQNGSSSEPHGRGVTEMCQRVLCNMLTSEKFSSLCKTLFENFQGMKPESVFDFSVMNSRMKQKTYEQSPALFLSDIEQVWRKLQDTCNEIFALAKSLSTMSRTSYCELVGVSAQSTFEDEKQVEFGSHIKPETMEECDTYKICCCSHCGERADGTDCLVCDSCEKMYHLSCIEPAVKEIPHKSWYCANCTTDGIGSPHANCVVCMRLNDIKTSKKIIGDESLPTNEETLHEFEENSNCSYDGIQISTGGEKVPDCKVCGNEVEGGKIKVCGHRYCPSKYYHARCLTSKLLKSYGNCWYCPSCLCQVCVTDQDDDQIVLCDGCDHAYHIYCMKPPLASIPEGKWFCKKCDAGIKAISQAKKAYEKNKPRTSENVSKPKANNENKFSNNYVLALESGGGMDMLLTAANSLNFEENLAENQIE 669
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g02200 669 Pfam PHD-finger 553 598 IPR019787 -
Car05g02200 669 MobiDBLite consensus disorder prediction 245 261 - -
Car05g02200 669 MobiDBLite consensus disorder prediction 117 136 - -
Car05g02200 669 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 497 603 IPR013083 -
Car05g02200 669 MobiDBLite consensus disorder prediction 242 261 - -
Car05g02200 669 PANTHER D4, ISOFORM A 177 661 - -
Car05g02200 669 SUPERFAMILY FYVE/PHD zinc finger 552 602 IPR011011 -
Car05g02200 669 SMART ring_2 394 438 IPR001841 -
Car05g02200 669 SMART ring_2 504 551 IPR001841 -
Car05g02200 669 SMART ring_2 553 597 IPR001841 -
Car05g02200 669 PANTHER HISTONE ACETYLTRANSFERASE 177 661 - -
Car05g02200 669 SMART PHD_3 393 439 IPR001965 -
Car05g02200 669 SMART PHD_3 503 552 IPR001965 -
Car05g02200 669 SMART PHD_3 555 598 IPR001965 -
Car05g02200 669 Gene3D - 282 442 - -
Car05g02200 669 SUPERFAMILY FYVE/PHD zinc finger 379 439 IPR011011 -
Car05g02200 669 MobiDBLite consensus disorder prediction 119 136 - -
Car05g02200 669 ProSiteProfiles Zinc finger PHD-type profile. 550 600 IPR019787 -
Car05g02200 669 ProSiteProfiles Zinc finger PHD-type profile. 391 441 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g02200 Car-Chr5 67233028 67239500 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g02200 552 617 C2H2 Transcription Factor Family AT3G01460 42.424 2.47e-14 75.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Car05g02200 PHD 4.5e-13 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g02200 - - gmx:100795906 842.417
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car05g02200 05 67233028 67239500 Car05g02200 05 67233028 67239500 ECH