Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g02190 ATGGGAAGAGGTAAGATTGAGATCAAGAGAATTGAAAACTCAAGCAACAGGCAAGTTACTTATTCAAAGAGAAAGAATGGTATCCTTAAGAAAGCAAAGGAAATAAGTGTTCTTTGTGATGCTCAAGTTTCTCTTATTCTCTTTGGTGCTTCTGGAAAGATGCATGAATACATCAGCCCCTCCACCACGTTGATTGATATCTTGGATAGATACCAAAGAGCCTCTGGAAAAACCCTTTGGGATGCTAAGCATGAGAACCTCAGCAATGAAATTGATAGAATCAAAAAGGAGAATGATAGCATGCAAATTGAGCTCAGGCACTTGAAGGGAGAGGACGTCACTTCACTTAATTACAAAGAGCTTATGGCTCTTGAGGATGCCCTTGAAACTGGCCTTACTGGTGTCCGTGACAAAAAGTCAGAAGTGCATAGGATGATCAAGAGAAATGGCAAGATTTTGGAGGATGAAAATAAGGAACTCAATTTCCTTCTGCAACAACATTTGGCACTGGAAGGTGTTGGAAACATGCACGGACAATGGATTTAA 546 0.4029 MGRGKIEIKRIENSSNRQVTYSKRKNGILKKAKEISVLCDAQVSLILFGASGKMHEYISPSTTLIDILDRYQRASGKTLWDAKHENLSNEIDRIKKENDSMQIELRHLKGEDVTSLNYKELMALEDALETGLTGVRDKKSEVHRMIKRNGKILEDENKELNFLLQQHLALEGVGNMHGQWI 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g02190 181 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Car05g02190 181 ProSiteProfiles K-box domain profile. 84 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Car05g02190 181 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Car05g02190 181 SUPERFAMILY SRF-like 2 96 IPR036879 GO:0003677|GO:0046983
Car05g02190 181 CDD MADS_MEF2_like 2 80 IPR033896 GO:0000977|GO:0045944
Car05g02190 181 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 175 - -
Car05g02190 181 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Car05g02190 181 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Car05g02190 181 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Car05g02190 181 Coils Coil 77 111 - -
Car05g02190 181 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Car05g02190 181 PANTHER MADS-BOX TRANSCRIPTION FACTOR 1 175 - -
Car05g02190 181 Pfam K-box region 81 161 IPR002487 GO:0003700|GO:0005634|GO:0006355
Car05g02190 181 Gene3D - 13 101 IPR036879 GO:0003677|GO:0046983
Car05g02190 181 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g02190 Car-Chr5 67142695 67144943 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g02190 1 146 MADS-box Gene Family AT5G20240 68.493 3.41e-70 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Car05g02190 K-box 3.3e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g02190 K09264 - gmx:100795861 342.428
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car05g02190 05 67142695 67144943 Car05g02190 05 67142695 67144943 ECH