LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Car05g02179	ATGAGCTTCTTGAGGCCATCTGCAATGTACAACTTTTTGATTACTTATTATCCTTCCCTGCGATGGATGCCTTGTCAGAGTTGGGGGCTCCTTCGATGGCCAGGTCTAGACGGTTTCTTCAGACTTCTTGTGGTTTTGCTTCTCTGGTCTACCTTCTCTCAACTTTTCTACATACCTTCTTCTTCTATGTATCCTACACTTCGCGTTGGAGATCGAATTATTGTCGAAAAGGCTTCATATTACATCAGGAGTCCTGCTATACATGAAATTGTAACATTTCGAGATCCAACACAGCATTCTGAAGACAACACAGATGTTTTTATCAAGAGAGTTGTTGCAAAAGCAGGAGACACTGTTGAGGTTCATCATGGGGGACTCTATGTCAATGGTGTTGCTCAAGAGGAGGATTTCGTGGCAGAGCCGCCAACATACACAACCAAATTAACTTATGTGCCCAAAGGCCATGTTTATGTGTTGGGGGATAATCGCAATAATAGCTATGATTCACATATATGGGGACCACTTCCTATTAAAAACATAGTTGGAAGATATGTCATGTGCTGTCACAGACCAACAAATTAA	582	0.4175	MSFLRPSAMYNFLITYYPSLRWMPCQSWGLLRWPGLDGFFRLLVVLLLWSTFSQLFYIPSSSMYPTLRVGDRIIVEKASYYIRSPAIHEIVTFRDPTQHSEDNTDVFIKRVVAKAGDTVEVHHGGLYVNGVAQEEDFVAEPPTYTTKLTYVPKGHVYVLGDNRNNSYDSHIWGPLPIKNIVGRYVMCCHRPTN	193

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Car05g02179	193	TIGRFAM	sigpep_I_bact: signal peptidase I	41	187	IPR000223	GO:0006508\|GO:0008236\|GO:0016020
	Car05g02179	193	Gene3D	Umud Fragment, subunit A	60	191	-	-
	Car05g02179	193	PANTHER	CHLOROPLAST PROCESSING PEPTIDASE-LIKE	1	193	-	-
	Car05g02179	193	CDD	S26_SPase_I	54	183	IPR019533	GO:0004252\|GO:0006465
	Car05g02179	193	ProSitePatterns	Signal peptidases I serine active site.	60	67	IPR019756	GO:0004252\|GO:0016021
	Car05g02179	193	Pfam	Signal peptidase, peptidase S26	40	186	IPR019533	GO:0004252\|GO:0006465
	Car05g02179	193	PANTHER	SIGNAL PEPTIDASE I	1	193	IPR000223	GO:0006508\|GO:0008236\|GO:0016020
	Car05g02179	193	PRINTS	Bacterial leader peptidase 1 (S26A) family signature	51	67	IPR000223	GO:0006508\|GO:0008236\|GO:0016020
	Car05g02179	193	PRINTS	Bacterial leader peptidase 1 (S26A) family signature	107	119	IPR000223	GO:0006508\|GO:0008236\|GO:0016020
	Car05g02179	193	PRINTS	Bacterial leader peptidase 1 (S26A) family signature	151	170	IPR000223	GO:0006508\|GO:0008236\|GO:0016020
	Car05g02179	193	SUPERFAMILY	LexA/Signal peptidase	51	186	IPR036286	-
	Car05g02179	193	ProSitePatterns	Signal peptidases I signature 3.	156	169	IPR019758	GO:0004252\|GO:0016021

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Car05g02179	Car-Chr5	67033335	67035287	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Car05g02179	63	183	MADS-box Gene Family	AT1G29960	31.148	1.93e-08	48.9

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Car05g02179	K03100		-	gmx:100306121	342.043

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Car05g02179	05	67033335	67035287	Car05g02179	05	67033335	67035287	ECH