Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g02175 ATGGCGCCAATCATCCCGAGTTCTCAACCATGGGTCGAAAAATACCGACCAAAGCAAGTGAAAGACGTAGCTCACCAAGAAGAAGTGATTCGAGTACTCACCAACACTCTCGAAACCGGAAGTTGTCCTCACATGCTCTTCTACGGTCCTCCCGGCACCGGGAAAACCACTACTGCCCTCGCTATCGCCCATCAACTTTTCGGGCCTGAGCTTTATAAGTCTAGGGTTCTGGAACTAAATGCTAGTGATGATCGTGGTATAAATGTTGTTCGGACTAAGATTAAAGATTTTGCTGCTGTGGCTGTGGGTACCAATCAGCGCAAGAATGGGTATCCTTGTCCACCATATAAGATAATTGTCTTGGATGAGGCGGATTCAATGACCGAAGATGCTCAGAATGCACTGAGGCGTACGATGGAAACTTACTCTAAAGTTACACGGTTCTTTTTTATATGCAACTACATTAGCAGGATTATAGAACCACTTGCTTCAAGGTGTGCAAAATTCAGGTTCAAGCCTTTGACAGAAGAAATCATGAGCAGCCGAATATTATACATCTGCAAAGAAGAAGGACTCTACCTTGATGCCGAGGGTCTTTCAGCCCTAAGTTCTATTTCTCAAGGAGATCTTCGTCGAGCTATAACATACTTGCAGTCCGCTGCTCGCTTATTTGGATCTTCCATTTCTTCGAAGGACCTGATTTCTGTGTCTGGGGTTGTTCCAGCAGAGGTTGTGGAAGCACTTCTTAAAGCATGCAAAAGTGGTAATTTTGATTTAGCTAACAAGGAAGTCAATAATTTCATTGCAGAGGGGTATCCAGTCTCTCAGATACTAACTCAGTTGTTTGAGGCTATTGTTGAAGAAAATGACATATCAGATGAACAGAAGGCAAGAATATCCAAGAAGCTGGGTGAAGCAGATAAGTGCCTAGTTGATGGTGCTGATGAATACTTGCAGCTTCTTGCTGTAGTCAGCAATACAATACAAGCTTTATGTAACCTGCCAGAAGGATTTGCTTACGAGTGA 1026 0.4357 MAPIIPSSQPWVEKYRPKQVKDVAHQEEVIRVLTNTLETGSCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGTNQRKNGYPCPPYKIIVLDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLTEEIMSSRILYICKEEGLYLDAEGLSALSSISQGDLRRAITYLQSAARLFGSSISSKDLISVSGVVPAEVVEALLKACKSGNFDLANKEVNNFIAEGYPVSQILTQLFEAIVEENDISDEQKARISKKLGEADKCLVDGADEYLQLLAVVSNTIQALCNLPEGFAYE 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g02175 341 SUPERFAMILY post-AAA+ oligomerization domain-like 240 325 IPR008921 GO:0003677|GO:0006260
Car05g02175 341 SMART AAA_5 41 174 IPR003593 -
Car05g02175 341 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 6 330 - -
Car05g02175 341 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 8 233 IPR027417 -
Car05g02175 341 CDD HLD_clamp_RFC 174 233 - -
Car05g02175 341 Gene3D - 176 239 - -
Car05g02175 341 Pfam ATPase family associated with various cellular activities (AAA) 45 172 IPR003959 GO:0005524|GO:0016887
Car05g02175 341 Gene3D - 4 173 IPR027417 -
Car05g02175 341 Gene3D - 240 329 - -
Car05g02175 341 Pfam Replication factor C C-terminal domain 241 325 IPR013748 -
Car05g02175 341 CDD AAA 26 166 - -
Car05g02175 341 PANTHER REPLICATION FACTOR C SUBUNIT 4 6 330 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g02175 Car-Chr5 67000453 67005025 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g02175 1 338 Core DNA Replication Machinery Family AT1G21690 78.171 0.0 553
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g02175 K10755 - gmx:100788329 617.076
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car05g02175 05 67000453 67005025 Car05g02175 05 67000453 67005025 ECH