Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g02173 ATGGCAAACTTGATGCAGCAACATCAAGTTAAGGAAACATCCTCAAATCATGAGACACATAAATCTTCTGGATGGAGAAAGTTCTTGCCATATATTGGTCCTGGTTTCCTTGTTTCATTGGCTTACCTTGATCCTGGAAATATGGAAACTGATTTGCAAGCTGGAGCTAACCACAAATATGAGCTGCTGTGGTTGGTACTAATTGGACTCATATTTGCACTTATAATTCAATCATTGGCTGCAAATCTCGGCGTAACCACCGGAAAACACCTTTCAGAAGTATGTAAAATTGAGTATCCACTATTTGTGAAGTACTGTTTATGGTTATTAGCAGAGGTTGCTGTCATAGCTGCTGACATACCTGAAGTGATTGGGACAGCTTTTGCCCTTAACATACTCTTCCACATCCCATTATGGGCAGGAGTTCTTTTGACTGGCTGCAGCACTCTCTTGCTTTTGAGTCTGCAGAGGTTTGGGGTGAGGAAATTGGAACTACTGATAACAATTCTAGTATTTGTAATGGCTGCATGTTTCTTTGCGGAAATGAGCTATGTAAACCCCCCAGCTTCTGGTGTACTAAAGGGAATGTTTGTGCCCAAACTCAGCGGAAGTGGAGCAGTAGGCGATGCCATTGCCCTTTTGGGTGCCCTTATTATGCCGCACAATCTTTTCCTCCACTCTGCGCTGGTGCTATCTAGAAAAGTACCTAGTTCTGTACGAGGCATCAATGATGCATGTAGATACTTTCTATACGAGAGTGGATTCGCTCTGTTTGTAGCGTTTTTAATCAATGTTGCAATGATTTCTGTGTCGGGCACTGTTTGCTCTGCCAGTGACCTTTCTGGAGAAAATGCAGATCGCTGCAACAATCTTACCCTTAACTCTGCTTCTTTCCTTCTCAAGAATGTGTTGGGACGATCAAGCTCAACCATTTATGCCATAGCACTGCTTGCCTCAGGACAAAGTTCTACCATCACAGGAACCTATGCAGGACAGTACATTATGCAGGGTTTCTTAAACATAAGGATGAAAAGATGGAAAAGGAACTTGATGACTAGGTGCATTGCCATAGCACCTAGTCTTGTTGTTTCCATCGTTGGCGGTTCTTCTGGCTCTAGTCAGCTTATCATCATCGCATCAGTTTGTATACTTTGTCATTCCTTCCTTCCTTTATAG 1176 0.4277 MANLMQQHQVKETSSNHETHKSSGWRKFLPYIGPGFLVSLAYLDPGNMETDLQAGANHKYELLWLVLIGLIFALIIQSLAANLGVTTGKHLSEVCKIEYPLFVKYCLWLLAEVAVIAADIPEVIGTAFALNILFHIPLWAGVLLTGCSTLLLLSLQRFGVRKLELLITILVFVMAACFFAEMSYVNPPASGVLKGMFVPKLSGSGAVGDAIALLGALIMPHNLFLHSALVLSRKVPSSVRGINDACRYFLYESGFALFVAFLINVAMISVSGTVCSASDLSGENADRCNNLTLNSASFLLKNVLGRSSSTIYAIALLASGQSSTITGTYAGQYIMQGFLNIRMKRWKRNLMTRCIAIAPSLVVSIVGGSSGSSQLIIIASVCILCHSFLPL 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g02173 391 PRINTS Natural resistance-associated macrophage protein signature 320 339 IPR001046 GO:0016020|GO:0030001|GO:0046873
Car05g02173 391 PRINTS Natural resistance-associated macrophage protein signature 160 181 IPR001046 GO:0016020|GO:0030001|GO:0046873
Car05g02173 391 PRINTS Natural resistance-associated macrophage protein signature 210 233 IPR001046 GO:0016020|GO:0030001|GO:0046873
Car05g02173 391 PRINTS Natural resistance-associated macrophage protein signature 135 154 IPR001046 GO:0016020|GO:0030001|GO:0046873
Car05g02173 391 PRINTS Natural resistance-associated macrophage protein signature 348 365 IPR001046 GO:0016020|GO:0030001|GO:0046873
Car05g02173 391 PRINTS Natural resistance-associated macrophage protein signature 107 133 IPR001046 GO:0016020|GO:0030001|GO:0046873
Car05g02173 391 PANTHER METAL TRANSPORTER NRAT1-RELATED 17 383 - -
Car05g02173 391 Pfam Natural resistance-associated macrophage protein 49 381 IPR001046 GO:0016020|GO:0030001|GO:0046873
Car05g02173 391 PANTHER SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER 17 383 IPR001046 GO:0016020|GO:0030001|GO:0046873
Car05g02173 391 TIGRFAM nramp: metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family 26 383 IPR001046 GO:0016020|GO:0030001|GO:0046873
Car05g02173 391 MobiDBLite consensus disorder prediction 1 21 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g02173 Car-Chr5 66991888 66997381 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g02173 10 383 Inorganic Solute Cotransporters AT1G15960 63.733 1.85e-177 503
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g02173 K21398 - gmx:100787785 616.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car05g02173 05 66991888 66997381 Car05g02173 05 66991888 66997381 ECH