Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g02172 ATGGCGCAAGAAACGAGTAATCGTATTGTAGCTGTTGATGTGACTCCTTCTACAACACCAGTTCATGATCCCTCAATGCACGATCAGAGACCAGGATGGAGAAAGTTCTTGTCATATATAGGCCCCGGTTTTCTTGTCTCATTAGCATACCTTGATCCTGGAAACATGGAAACTGATTTGCAAGCTGGAGCTAACCACAGATATGAGCTGTTATGGATAATTCTTATTGGACTCATATTTGCGCTTATAATTCAATCATTGGCTGCAAATCTTGGAGTATGCACTGGAAAACACCTTTCAGAAGTTTGTAAAGCTGAGTATCCATTATTTGTGAAGTACTGCTTGTGGATATTAGCTGAGCTTGCTGTCATTGCTGCAGACATACCTGAAGTTATTGGGACAGCCTTTGCCCTTAACATACTATTCAAAATCCCAGTATGGGTTGGAGTTTTGTTGACTGGCTGCAGCACTCTCTTGTTTTTGGGTCTGCAAAGATTTGGGGTAAGGAAATTGGAACTGTTGATATCAATATTAGTATTTGTAATGGCTGCATGTTTCTTTGGAGAAATGAGCTACGTAAAACCCCCAGCTTCTGGTGTCATAGAGGGAATGTTTGTCCCTAAACTCAATGGAGATGGAGCTGTAGCAGATGCTATTGCCCTTTTGGGTGCCCTTATCATGCCGCACAATCTTTTTCTTCACTCTGCTCTAGTGTTGTCTAGAAAAATACCCGGTTCTGTGCGTGGTATCAATGATGCATGCAGATACTTTCTCATTGAGAGTGCATTTGCTTTGTTTGTGGCATTTCTAATCAATGTTGCAATGATTTCTGTGACTGGCACCGTTTGCTCTGCCGATAACCTATCTGCAGACGACACTGATCGCTGCAGTGATCTTACCCTTAACTCTGCTTCTTTCCTTCTCCAGAATGTGTTGGGACGTTCAAGCTCAACAATTTATGCCATAGCGTTGCTAGCCTCAGGACAAAGTTCTGCCATCACTGGAACCTATGCAGGACAGTTTATCATGCAGGGTTTCTTGGATTTAAAGATGAAAAAATGGATTAGGAACTTGGTGACTAGGATTATTGCCATAGCACCTAGTCTTGTTGTCTCTATCATTGGTGGTTCCTCTGGAGCTGGAAAGCTTATTGTCATTGCGTCGatgatactttcttttgagcttccatttgctttaattccactccttaagtttagcagtagcaGTACCAAGATGGGACCTCACAAGAATTCTATGATTATCATTGTCATCTCATGGATACTGGGTTTTGGAATCATCAGTATCAATGTGTACTACCTCATTACAGCTTTCGTAGGTTGGATAATTCATAGCAGTCTACCAAAGGTTGCAACTGTGTTCATTGGGATCATAGTGTTTCCTCTAATGGCACTCTATATTGTATCAGTTATCTATCTAACCTTTAGAAAAGACGTTGTTAAAACATTTGTGGAGGTGAAGGATGATCCAGCAATGCAAACCCACGTGGAAAAGGGGTTTGTAAACAATGGTCAGGTAGAGTTGAATCATGCTCCTTACAGAGAGGATTTAGCTGATATAGCACTACCAGAAGGACCTAGGCTATGA 1605 0.4019 MAQETSNRIVAVDVTPSTTPVHDPSMHDQRPGWRKFLSYIGPGFLVSLAYLDPGNMETDLQAGANHRYELLWIILIGLIFALIIQSLAANLGVCTGKHLSEVCKAEYPLFVKYCLWILAELAVIAADIPEVIGTAFALNILFKIPVWVGVLLTGCSTLLFLGLQRFGVRKLELLISILVFVMAACFFGEMSYVKPPASGVIEGMFVPKLNGDGAVADAIALLGALIMPHNLFLHSALVLSRKIPGSVRGINDACRYFLIESAFALFVAFLINVAMISVTGTVCSADNLSADDTDRCSDLTLNSASFLLQNVLGRSSSTIYAIALLASGQSSAITGTYAGQFIMQGFLDLKMKKWIRNLVTRIIAIAPSLVVSIIGGSSGAGKLIVIASMILSFELPFALIPLLKFSSSSTKMGPHKNSMIIIVISWILGFGIISINVYYLITAFVGWIIHSSLPKVATVFIGIIVFPLMALYIVSVIYLTFRKDVVKTFVEVKDDPAMQTHVEKGFVNNGQVELNHAPYREDLADIALPEGPRL 534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g02172 534 PANTHER METAL TRANSPORTER NRAT1-RELATED 20 529 - -
Car05g02172 534 Pfam Natural resistance-associated macrophage protein 57 418 IPR001046 GO:0016020|GO:0030001|GO:0046873
Car05g02172 534 Hamap Divalent metal cation transporter MntH [mntH]. 26 444 IPR001046 GO:0016020|GO:0030001|GO:0046873
Car05g02172 534 PRINTS Natural resistance-associated macrophage protein signature 115 141 IPR001046 GO:0016020|GO:0030001|GO:0046873
Car05g02172 534 PRINTS Natural resistance-associated macrophage protein signature 143 162 IPR001046 GO:0016020|GO:0030001|GO:0046873
Car05g02172 534 PRINTS Natural resistance-associated macrophage protein signature 168 189 IPR001046 GO:0016020|GO:0030001|GO:0046873
Car05g02172 534 PRINTS Natural resistance-associated macrophage protein signature 218 241 IPR001046 GO:0016020|GO:0030001|GO:0046873
Car05g02172 534 PRINTS Natural resistance-associated macrophage protein signature 328 347 IPR001046 GO:0016020|GO:0030001|GO:0046873
Car05g02172 534 PRINTS Natural resistance-associated macrophage protein signature 356 373 IPR001046 GO:0016020|GO:0030001|GO:0046873
Car05g02172 534 PRINTS Natural resistance-associated macrophage protein signature 388 407 IPR001046 GO:0016020|GO:0030001|GO:0046873
Car05g02172 534 TIGRFAM nramp: metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family 34 410 IPR001046 GO:0016020|GO:0030001|GO:0046873
Car05g02172 534 PANTHER SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER 20 529 IPR001046 GO:0016020|GO:0030001|GO:0046873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g02172 Car-Chr5 66973781 66978329 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g02172 1 530 Inorganic Solute Cotransporters AT1G15960 57.435 0.0 619
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g02172 K21398 - gmx:100787785 879.011
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car05g02172 05 66973781 66978329 Car05g02172 05 66973781 66978329 ECH