Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g02167 ATGGTCGATACAGTTGCGAGATTAGCACAGTGGAAAATCGACAACTTGGGACCTTGTTCTTACAAAAAATCTGATCCTTTCAAGCTCGGAATCTGGAACTGGTGTTTTGCAATTGTAAGGAATAGGTTTCTCTCTATACATCTTTTTCCAGAACCTTCTCGGGTTTCTAAGGAACACCCTCCAGTTGCTAAATTCGTTCTTCGAATCTCTGTTGCTGGTTCTTCTCGCAAGTTTCTTGTTTCTCCTGTTTATGAAAGGGTGCTTAAGACACAAGATGACTTTGTCTGGCCTGTTGATACCGCTTTCACAGGCCGCTTCATCATCGATGTTGAGTTTCTTGAACTAAAGATATGCCATATGAATGGTGGAGAAGCTAGTTCTATATGGTCAACTGATGGAAATTCAATATGCAATGAAGCTCAAAGAAGTACTCTTTGTTGCCTTTCTCGCATGCTCGACGAGGCTATACATGCTGACCTAACCATCATCACTTCTGACGGTACATTGAGAGCTCACAAGGCGATTATGTCTGCAAGTTCACCTGTGTTTCAAAGCATGTTTCATCACGACCTGAAGGAAAAAGAGTCATCAACGATTCATATAGAAGACATGTCACTTGAGTCCTGCACCGCTCTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCTACGTTACTTGTATGGATCAATTAAACAAGAAGATTTCCGGAAACACTGTCTCGCATTGCTTGGAGCAGCTAACAAGTACGATATTGGTGGTCTGAAAGATTTATGTGAGGAAAGCCTTTTGGAAGATATTAACTCAGACAATGTTCTTGAAATGTTGAATGAGGCTTGGCTTTATCACTTACACAAGTTAAAGAAAGGATGTTTAACATTCTTATTTGAATTTGGTAAAATATATGATATTAGAGATGATGAAATAAATAACCTTTTCAAGCATGCTGATAGGGAGCTAGTGATGGAGATGTTTCAGGAGGAAGCTAGCTTCTATTTTGAGGCAAGCTATTTGTTGGCGGATCCACAAGAACCCTTCTTAAGGTACGTACCAGTATTTTAA 1149 0.3568 MVDTVARLAQWKIDNLGPCSYKKSDPFKLGIWNWCFAIVRNRFLSIHLFPEPSRVSKEHPPVAKFVLRISVAGSSRKFLVSPVYERVLKTQDDFVWPVDTAFTGRFIIDVEFLELKICHMNGGEASSIWSTDGNSICNEAQRSTLCCLSRMLDEAIHADLTIITSDGTLRAHKAIMSASSPVFQSMFHHDLKEKESSTIHIEDMSLESCTALXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLRYLYGSIKQEDFRKHCLALLGAANKYDIGGLKDLCEESLLEDINSDNVLEMLNEAWLYHLHKLKKGCLTFLFEFGKIYDIRDDEINNLFKHADRELVMEMFQEEASFYFEASYLLADPQEPFLRYVPVF 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g02167 382 CDD BTB_POZ_ZBTB_KLHL-like 157 212 - -
Car05g02167 382 Pfam BTB/POZ domain 151 212 IPR000210 GO:0005515
Car05g02167 382 ProSiteProfiles BTB domain profile. 158 257 IPR000210 GO:0005515
Car05g02167 382 PANTHER OS08G0495500 PROTEIN-RELATED 251 359 IPR044714 -
Car05g02167 382 PANTHER OS08G0495500 PROTEIN-RELATED 2 214 IPR044714 -
Car05g02167 382 Gene3D Potassium Channel Kv1.1; Chain A 126 325 IPR011333 -
Car05g02167 382 SUPERFAMILY POZ domain 141 211 IPR011333 -
Car05g02167 382 PANTHER BTB/POZ DOMAIN PLANT PROTEIN 251 359 - -
Car05g02167 382 PANTHER BTB/POZ DOMAIN PLANT PROTEIN 2 214 - -
Car05g02167 382 Coils Coil 212 212 - -
Car05g02167 382 SMART BTB_4 158 296 IPR000210 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g02167 Car-Chr5 66937451 66939837 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Car05g02167 BTB 2e-11 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g02167 K10523 - gmx:100787262 483.796