Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g02153 atgaaattgagaacaaGCAACGTAATTGACTCGTTTGCTTCTGGATTCGGAAAAGTTGTTGCAAATATTTTCAGTTCTCCAATTGAATTTCTTTCCGGAAAGTCTTGTAGCTCTGTATGTGGACCAACTTGGGATCTCTTTTGTTATATTGAAAATTTCTGTGTTGCTAATCTATTGAGGCTAGGAGTGGTATTTGTTCTATTGTACATTGAGGAGGAGAAGAAGAAAGAATTTAGCAGATCGTTTTCGCGTCGAAGGAGAGACTTCAAAGGCTCACACCTAAGAAAGTCTTTGAAGCCTAGGAGAGGTCATGCTCAAGTTGAAATTAGTAGAGATCTTAGTTATAAAAATAAAGGAAATCATAGTAGTAGAGATCCTAGTCACAGAAGTAATGTCATTAAGCATGGTTTGACACCTTGGAATAGACAGAATATGGAATATAGGGGATCCAAGACAAAGCATTTCCATTACTTGACATTGAAGTTTTTTCATCCCAAAAGAAATCTTAAAAAGTATGTTCTTATATGTTCATCCTCTCAAATACCTCAAGTGCCTTCTTCTATTCTCAATCTCTCAATTGTATTCTACTCATATTTAACACTCGTGCAACGTGCGAGGAGATATCAGATATTTGTAAGTTATTTTGTATTTTTATTTGGTGAAAAACTTCCTTCAATGGAACGTGAGGAGGGCAAACAATCATCCCCAAAAAATCCATATACTGAACTTGAGGAAGTTAGCTTAGATTTTACTCTAGCAATTGGGTTGCAAGAACAAGGGAGAACATTTACAAATCTAGCAACAATTGAAAGTGAAAATGATGATGATTTTCTtgaagatgaaggaagctttattgatgatgatgacgacgacggcgaaatggaaatggaagaagatgagattgatccagatgaaTTATCTTATGAAGAGTTGATTGAGTTAGGAGAGCTTATAGGAGATGAGAAGAGAGGATTATCAGCAAATGAAATCTCTTCCTGCCTAAACTCTTACACTTCCCAAACTGCTGAAAGCAAAAGTGGAATTGATCGTTGTGTGATTTGTCAGATTGAATATGAAAAAGGTGAAGCCTTAGTGGCACTTCAATGTGATCACCCTTATCATAAAGATTGCATTAGCAAATGGCTTCAAATTAAGAAGGTTTGTCCAATATGTAGCAATGAAGTATCAACTCCTAACAAGGCTAAGAACCCTTGA 1215 0.33 MKLRTSNVIDSFASGFGKVVANIFSSPIEFLSGKSCSSVCGPTWDLFCYIENFCVANLLRLGVVFVLLYIEEEKKKEFSRSFSRRRRDFKGSHLRKSLKPRRGHAQVEISRDLSYKNKGNHSSRDPSHRSNVIKHGLTPWNRQNMEYRGSKTKHFHYLTLKFFHPKRNLKKYVLICSSSQIPQVPSSILNLSIVFYSYLTLVQRARRYQIFVSYFVFLFGEKLPSMEREEGKQSSPKNPYTELEEVSLDFTLAIGLQEQGRTFTNLATIESENDDDFLEDEGSFIDDDDDDGEMEMEEDEIDPDELSYEELIELGELIGDEKRGLSANEISSCLNSYTSQTAESKSGIDRCVICQIEYEKGEALVALQCDHPYHKDCISKWLQIKKVCPICSNEVSTPNKAKNP 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g02153 404 Pfam Ring finger domain 350 391 IPR001841 -
Car05g02153 404 ProSiteProfiles Zinc finger RING-type profile. 351 392 IPR001841 -
Car05g02153 404 PANTHER E3 UBIQUITIN LIGASE BIG BROTHER-RELATED-LIKE 226 400 - -
Car05g02153 404 SUPERFAMILY RING/U-box 350 398 - -
Car05g02153 404 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 226 400 IPR045191 GO:0061630
Car05g02153 404 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 317 398 IPR013083 -
Car05g02153 404 SMART ring_2 351 391 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g02153 Car-Chr5 66742515 66745678 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g02153 268 395 C3H Transcription Factor Family AT3G63530 41.985 1.43e-27 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g02153 K19045 - gmx:100526881 234.187