Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g02140 ATGATCCAATTTATGTTTAGGAATATACATCGAGAGACCATGACAATTGATCTCTCTAAACTCTTTCAAAAACTTTGCAACAAAATTGCAATCCTATTAGTATTCGTGTTAGTAGAACTTATAATCCTCATTTGGAGACTAACATCAGACACACGACCAATCACAACTCGCCAATACATCAAATTCATCGAAGAAAAGAACCCCACAATTCGCTACAACAAAAAACTGAAATCACACGTGGAATGTAGCGTGTGTTTATCGGAATTCGAAGAAGGAGAAAAAGTGAGGAGCTTGAAATGTAAACACACGTTTCATAAGGATTGTTTGGACAAATGGTTGCAAGATTATTTGGCTACATGCCCACTTTGTAGGAACAAGGTTTTGCCGGATCATGTTGTGTCCAAACATCGTGACCAGCTTCGAAATCAGCAAGGTAATGATTTTGAAGGGAATCATGATAATCTTCCTTATGTGTTGTTCTTGTTACGTGATGCTAATACTAGTCACTTGCGCGGACATGTTTGA 525 0.3771 MIQFMFRNIHRETMTIDLSKLFQKLCNKIAILLVFVLVELIILIWRLTSDTRPITTRQYIKFIEEKNPTIRYNKKLKSHVECSVCLSEFEEGEKVRSLKCKHTFHKDCLDKWLQDYLATCPLCRNKVLPDHVVSKHRDQLRNQQGNDFEGNHDNLPYVLFLLRDANTSHLRGHV 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g02140 174 Pfam Ring finger domain 81 124 IPR001841 -
Car05g02140 174 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 16 167 - -
Car05g02140 174 SMART ring_2 82 123 IPR001841 -
Car05g02140 174 ProSiteProfiles Zinc finger RING-type profile. 82 124 IPR001841 -
Car05g02140 174 SUPERFAMILY RING/U-box 62 130 - -
Car05g02140 174 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 48 129 IPR013083 -
Car05g02140 174 PANTHER - 16 167 - -
Car05g02140 174 CDD RING-H2_PA-TM-RING 81 124 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g02140 Car-Chr5 66621293 66622191 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g02140 81 135 C3H Transcription Factor Family AT1G15100 54.545 4.26e-17 72.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g02140 K16282 - gmx:102668078 179.874
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car05g02140 05 66621293 66622191 Car05g02140 05 66621293 66622191 ECH
Car06g00769 06 7628729 7630718 Car05g02140 05 66621293 66622191 PCT