Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g02107 ATGTATAATCCGAACCCAGACTCCCGTTACACGACCCGGAGACTTCACCCGCAAGAAGATCCAAATAGCACTCCAAACCCTCAGGTTCCGCTTCGGAACCTGTCCCTGGTTCGGACAAGAATCGATTCTCTACGAACCTTCTTATCCCAATCCATCAACACAAACACTCCCCTCACCACCGATCACATAACCCTCGTCTCCAACCAGATCGTCTCCGCCATCCACAATACCATAGTCAACGCCGCCGCCCTCGTCTCCTACTCTGAAAATCTCACCGTTCCCGGACCCTCTGTCTTCCCACCATTAAAACTCAAACCAGAACCCTCCGCCGTGGACAAAACCAACCATCAGAAGTCCGATTCGAGAATCGAACCcgccgaagacgacgacgactacctcgtcgacgaagaTTGCGAAATCGTGGAGCTCGACGCCGTGGAATTGCTAGCAGAACACATCCACTTCTGCGAGATTTGCGGGAAAGGTTTCAAGCGCGACGCGAATCTCCGGATGCACATGCGGGCGCACGGGAACAAGTTCAAGACGCCGGAAGCTCTCGCGAAACCTATAGACGACGGAGGACGCCGCCGCGCGACGCGGTTCTCTTGTCCTTTCCAAGGATGTAACAGAAACAAGATGCATATGAAGTTTAGGGCGTTGAAATCGGTGGTTTGTGTGAAGAATCATTTCAAGAGGAGCCATTGCCCGAAGATGTATTCGTGCAACCGGTGCCATAAGAAGAATTACTCGGTGTTATCGGATTTGAAGAGCCATATGAAGCAGTGTGGTGAGTGTAGGTGGAAGTGTTCGTGTGGGACCACTTTTTCTAGGAAGGACAAGTTGTTTGGACACGTTGCACTATTTGAGGGTCACATGCCTGATTTTCTATTTGAAGATGAGGAGAAAGAGAAAGGGAAGCAAGTTATGGTTGAGGAGAGTGAAGAAGATCCTATGGCCATGACATTTACCCAAGTTGAATTGGGTATGGATGAAGAGTTTTTTGATGATTTTGGCTCTATTGATAACTATTGTTTGAGGGAAGTCTTGGGATTTCCTAATGCTAACTAG 1068 0.4719 MYNPNPDSRYTTRRLHPQEDPNSTPNPQVPLRNLSLVRTRIDSLRTFLSQSINTNTPLTTDHITLVSNQIVSAIHNTIVNAAALVSYSENLTVPGPSVFPPLKLKPEPSAVDKTNHQKSDSRIEPAEDDDDYLVDEDCEIVELDAVELLAEHIHFCEICGKGFKRDANLRMHMRAHGNKFKTPEALAKPIDDGGRRRATRFSCPFQGCNRNKMHMKFRALKSVVCVKNHFKRSHCPKMYSCNRCHKKNYSVLSDLKSHMKQCGECRWKCSCGTTFSRKDKLFGHVALFEGHMPDFLFEDEEKEKGKQVMVEESEEDPMAMTFTQVELGMDEEFFDDFGSIDNYCLREVLGFPNAN 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g02107 355 ProSitePatterns Zinc finger C2H2 type domain signature. 156 176 IPR013087 -
Car05g02107 355 MobiDBLite consensus disorder prediction 1 30 - -
Car05g02107 355 SMART c2h2final6 201 234 IPR013087 -
Car05g02107 355 SMART c2h2final6 239 260 IPR013087 -
Car05g02107 355 SMART c2h2final6 154 176 IPR013087 -
Car05g02107 355 ProSiteProfiles Zinc finger C2H2 type domain profile. 154 181 IPR013087 -
Car05g02107 355 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 19 353 IPR044300 GO:0010044|GO:0010447
Car05g02107 355 MobiDBLite consensus disorder prediction 106 126 - -
Car05g02107 355 Gene3D Classic Zinc Finger 154 177 - -
Car05g02107 355 PANTHER ZINC FINGER PROTEIN STOP1 HOMOLOG 19 353 - -
Car05g02107 355 SUPERFAMILY beta-beta-alpha zinc fingers 151 177 IPR036236 -
Car05g02107 355 MobiDBLite consensus disorder prediction 109 125 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g02107 Car-Chr5 66277158 66279828 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g02107 127 299 C2H2 Transcription Factor Family AT1G34370 56.593 3.62e-71 222
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Car05g02107 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g02107 - - cam:101491258 681.019